Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,122,913 – 1,123,023 |
Length | 110 |
Max. P | 0.612518 |
Location | 1,122,913 – 1,123,023 |
---|---|
Length | 110 |
Sequences | 4 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 86.85 |
Mean single sequence MFE | -36.08 |
Consensus MFE | -28.89 |
Energy contribution | -30.32 |
Covariance contribution | 1.44 |
Combinations/Pair | 1.10 |
Mean z-score | -1.50 |
Structure conservation index | 0.80 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.612518 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1122913 110 + 22224390 ACCUUAAAGUUAGUAUCUCACAUGGCCACCAAGCCAUAUGGCAAUCACGGAGAGCAACCCGUGACCCAACUCGGGGUCACCAGCGGGUCUGUGCUAAGUUUCGGGCCUCU .(((.(((.(((((.((((...(((...))).(((....))).......))))((((((((((((((......)))))....)))))).)))))))).))).)))..... ( -38.10) >DroSec_CAF1 19656 108 + 1 ACCUUGAAGUUAGUAUCUCAUAUGGCCACCAAGAC--AUGGCAAUCACGGAGAGCAACCCGUGACCCGACUCGGGGUCACCAGCGGGUCUAUGCUAAGUUUCGGGCCUCU .(((.(((.((((((((((.....((((.......--.)))).......))))...(((((((((((......)))))....))))))...)))))).))).)))..... ( -37.00) >DroSim_CAF1 20602 108 + 1 ACCUUGAAGUUAGUAUCUCAUAUGGCCACCAAGGC--AUGGCAAUCACGGAGAGCAACCCGUGACCCGACUCGGGGUCACCAGCGGGUCUAUGCUAAGUUUCGGGCCUCU .(((.(((.((((((((((.....((((.......--.)))).......))))...(((((((((((......)))))....))))))...)))))).))).)))..... ( -37.00) >DroEre_CAF1 20725 95 + 1 ACCUUGAAGUUAGCAUCGCAUAUGGUCACCAAGAC--AC-------------AGCAACCCGUGACCCGACUGGGGGUCGCCAGGUGGUCUAUGCUAAGUUUCGGGCCUCU .(((.(((.(((((((......(((...)))((((--..-------------....(((.(((((((......)))))))..))).))))))))))).))).)))..... ( -32.20) >consensus ACCUUGAAGUUAGUAUCUCAUAUGGCCACCAAGAC__AUGGCAAUCACGGAGAGCAACCCGUGACCCGACUCGGGGUCACCAGCGGGUCUAUGCUAAGUUUCGGGCCUCU .(((.(((.((((((((((.....((((..........)))).......))))...(((((((((((......)))))))....))))...)))))).))).)))..... (-28.89 = -30.32 + 1.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:46 2006