Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,860,438 – 9,860,548 |
Length | 110 |
Max. P | 0.838815 |
Location | 9,860,438 – 9,860,548 |
---|---|
Length | 110 |
Sequences | 3 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 82.33 |
Mean single sequence MFE | -25.27 |
Consensus MFE | -18.09 |
Energy contribution | -17.43 |
Covariance contribution | -0.66 |
Combinations/Pair | 1.14 |
Mean z-score | -2.11 |
Structure conservation index | 0.72 |
SVM decision value | 0.74 |
SVM RNA-class probability | 0.838815 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9860438 110 + 22224390 AC-CCAUAUACCCAUUGAUAUCAUUGAUACACCAUU-GAAGAGUCCGAAAACACCAAAAUAACCAUUGGAGGGCAGAAAGCGGACACAGUCAGAUGGAUAUGGUAUGUGAAA ..-.((((((((((.((....)).)).....(((((-((...((((.......((((........))))...((.....))))))....))).))))....))))))))... ( -27.20) >DroSec_CAF1 5303 93 + 1 AGUGCGUGUACCC-------------------CAUUGGAAGAGUCCGAAAACACCAAAAUAACCAUUGGAGGGCAGAAAGCGGACACAGUCAGAUGGAUAUGGUAUGUGAAA ....((..(((((-------------------((((.((...((((.......((((........))))...((.....))))))....)).)))))....))))..))... ( -23.70) >DroSim_CAF1 5009 93 + 1 AGUGCGUAUACCC-------------------CAUUGGAAGAGUCUGAAAACACCAAGAUAACCAUUGGAGGGCAGAAAGCGGACUCAGUCAGAUGGAUAUGGUAUGUGAAA ....(((((((((-------------------((((.((.((((((.......((((........))))...((.....))))))))..)).)))))....))))))))... ( -24.90) >consensus AGUGCGUAUACCC___________________CAUUGGAAGAGUCCGAAAACACCAAAAUAACCAUUGGAGGGCAGAAAGCGGACACAGUCAGAUGGAUAUGGUAUGUGAAA ....((((((((..............................((((.......((((........))))...((.....))))))...(((.....)))..))))))))... (-18.09 = -17.43 + -0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:56 2006