Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,859,877 – 9,859,979 |
Length | 102 |
Max. P | 0.738782 |
Location | 9,859,877 – 9,859,979 |
---|---|
Length | 102 |
Sequences | 4 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 95.91 |
Mean single sequence MFE | -25.11 |
Consensus MFE | -24.40 |
Energy contribution | -24.02 |
Covariance contribution | -0.37 |
Combinations/Pair | 1.08 |
Mean z-score | -1.58 |
Structure conservation index | 0.97 |
SVM decision value | 0.44 |
SVM RNA-class probability | 0.738782 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9859877 102 - 22224390 UUUUUAUCUCUGCUUUAGCCUUUCCCGCCUUUGAGGGCAAUCAAUCUCGCAUUUGGUAACUGCCAUUUGCCCAGGCGAACAUCAACACACCUGCAUGGAUGA ...((((((.(((....((((.....((((....))))..........(((..((((....))))..)))..))))(.....).........))).)))))) ( -27.10) >DroSec_CAF1 4812 101 - 1 UUUUUAUCUCUGCUUUAGCCUUACCCGCCUUUGAGGGCAAUCAAUCUCGCAUUUGGUAACUGCCAUUUGCCCAGGCGAACAU-AACACACCUGCAUGGAUGG ....(((((.(((............(((((..((((........))))(((..((((....))))..)))..))))).....-.........))).))))). ( -25.37) >DroSim_CAF1 4521 101 - 1 UUUUUAUCUCUGCUUUAGCCUUUCCCGCCUUUGAGGGCAAUCAAUCUCGCAUUUGGUAACUGCCAUUUGCCCAGGCGAACAU-AACACACCUGCAUGGAUGA ...((((((.(((............(((((..((((........))))(((..((((....))))..)))..))))).....-.........))).)))))) ( -25.87) >DroYak_CAF1 4102 101 - 1 UUUUUAUUUCUGCUUUAGCCUUUCCCGCUUUUGAGGGCAAUCAAUCUCGCAUUUGGUAACUGCCAUUUGCCCAGGCGAAUGUUAACACACCUGCAUGGAUG- ....((((..(((....((((..(((........)))...........(((..((((....))))..)))..))))...(((....)))...)))..))))- ( -22.10) >consensus UUUUUAUCUCUGCUUUAGCCUUUCCCGCCUUUGAGGGCAAUCAAUCUCGCAUUUGGUAACUGCCAUUUGCCCAGGCGAACAU_AACACACCUGCAUGGAUGA ....(((((.(((....((((.....((((....))))..........(((..((((....))))..)))..))))(........)......))).))))). (-24.40 = -24.02 + -0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:55 2006