Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,854,001 – 9,854,092 |
Length | 91 |
Max. P | 0.999289 |
Location | 9,854,001 – 9,854,092 |
---|---|
Length | 91 |
Sequences | 3 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 74.69 |
Mean single sequence MFE | -11.27 |
Consensus MFE | -11.20 |
Energy contribution | -11.20 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -0.78 |
Structure conservation index | 0.99 |
SVM decision value | 3.49 |
SVM RNA-class probability | 0.999289 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9854001 91 - 22224390 CCCUGACCUUCCCCU----CCCCCGCUAC--U-------UUUAUUUUAUUUUAUUUUUGU---------UUUUGGUUUUUCUGGACCGCACACAUGCCACGCAUGCGUUACAG ..(((..........----..........--.-------.....................---------....(((((....)))))..((.(((((...))))).))..))) ( -11.20) >DroEre_CAF1 5779 94 - 1 CCCUGACCUUCCCCU----CCUCCACUUC--UUUUCAUAUUAUUUUUAG----UUUUUCU---------UUUUGGUUUUUCUGGACCGCACACAUGCCACGCAUGCGUUACAG ..(((..........----..........--..................----.......---------....(((((....)))))..((.(((((...))))).))..))) ( -11.20) >DroYak_CAF1 2289 109 - 1 CCCUGACCUUCCACUUCCCCUUCCCCUUCCCCUUCUACAUUGUUUUUAU----UAUUACUUUUUGGAUUUUUUGGUUUUUCUGGACCGCACACAUGCCACGCAUGCGUUACAG ..(((............................((((.(..((..(...----.)..))..).))))......(((((....)))))..((.(((((...))))).))..))) ( -11.40) >consensus CCCUGACCUUCCCCU____CCUCCACUUC__UUU__A_AUUAUUUUUAU____UUUUUCU_________UUUUGGUUUUUCUGGACCGCACACAUGCCACGCAUGCGUUACAG ..(((....................................................................(((((....)))))..((.(((((...))))).))..))) (-11.20 = -11.20 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:51 2006