Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,843,301 – 9,843,400 |
Length | 99 |
Max. P | 0.586694 |
Location | 9,843,301 – 9,843,400 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 82.22 |
Mean single sequence MFE | -22.39 |
Consensus MFE | -11.61 |
Energy contribution | -13.17 |
Covariance contribution | 1.56 |
Combinations/Pair | 1.10 |
Mean z-score | -2.61 |
Structure conservation index | 0.52 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.586694 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9843301 99 - 22224390 CAGCACAAUCUAAUAAUAUAGCAUCAACACUUUAACAAUUGGAAAAGUUUCUUCCGCUACU------UGACAACGACUUAAAAAAUAGGAAAUAAGAUUGUGCUG--- (((((((((((.......((((......(((((..(....)..))))).......))))..------.........((((.....)))).....)))))))))))--- ( -22.02) >DroPse_CAF1 12527 108 - 1 CAGCACAAUCUAAUAAUAUACCAUCAACACUUUAACAAUUGGAAAAGUUUCUUCCGCCCCGCUAACUUUUCUCUGGGAAACAGAAGAGGGCAGGAGCAGGAGCAGAGG ............................(((((..(....)..)))))..((((.((((.(((..((.((((((.(....)...)))))).)).))).)).)).)))) ( -23.30) >DroSec_CAF1 4887 99 - 1 CAGCACAAUCUAAUAAUAUAGCAUCAACACUUUAACAAUUGGAAAAGUUUCUUCCGCUACU------UGACAACGACUAAAAAAAUAGGAAAUAAGAUUGUGCUG--- (((((((((((.......((((......(((((..(....)..))))).......))))..------.........(((......)))......)))))))))))--- ( -21.82) >DroSim_CAF1 5130 99 - 1 CAGCACAAUCUAAUAAUAUAGCAUCAACACUUUAACAAUUGGAAAAGUUUCUUCCGCUACU------UGACAACGACUAAAAAAAUAGGAAAUAAGAUUGUGCUG--- (((((((((((.......((((......(((((..(....)..))))).......))))..------.........(((......)))......)))))))))))--- ( -21.82) >DroEre_CAF1 4923 98 - 1 CAGCACAAUCUAAUAAUAUAGCGUCAACACUUUAACAAUUGGAAAAGUUUCUUCCGCUCCU------UGACAACGAAUAA-AAAAUAGAAAAUAAGAUUGUGCUG--- (((((((((((........((((.....(((((..(....)..)))))......))))..(------((....)))....-.............)))))))))))--- ( -21.10) >DroPer_CAF1 12668 106 - 1 CAGCACAAUCUAAUAAUAUACCAUCAACACUUUAACAAUUGGAAAAGUUUCUUCCGCCCCUCUAACUUUUCCCUGAGAAACAGAAGAGGACAGGGGCAGGAGCAG--G ..((........................(((((..(....)..)))))....(((((((((....((((((...........))))))...)))))).)))))..--. ( -24.30) >consensus CAGCACAAUCUAAUAAUAUAGCAUCAACACUUUAACAAUUGGAAAAGUUUCUUCCGCUACU______UGACAACGACUAAAAAAAUAGGAAAUAAGAUUGUGCUG___ (((((((((((.................(((((..(....)..)))))....(((................................)))....)))))))))))... (-11.61 = -13.17 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:48 2006