Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,838,244 – 9,838,351 |
Length | 107 |
Max. P | 0.780989 |
Location | 9,838,244 – 9,838,351 |
---|---|
Length | 107 |
Sequences | 6 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 73.07 |
Mean single sequence MFE | -29.17 |
Consensus MFE | -20.23 |
Energy contribution | -22.37 |
Covariance contribution | 2.14 |
Combinations/Pair | 1.10 |
Mean z-score | -1.10 |
Structure conservation index | 0.69 |
SVM decision value | 0.56 |
SVM RNA-class probability | 0.780989 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9838244 107 + 22224390 ACGCGCACGCGACAAAAACAGCAUGAGGCAGCCAAGUAGACAGCACAUCCUGGCGCUCCUGAUCCUCGGCAGCGCCGCCUGCCUCAUCAGCGCCGUACCGCUACCGC ..((((..((..........))(((((((((.(..((.....)).......((((((.(((.....))).))))))).)))))))))..)))).............. ( -38.70) >DroVir_CAF1 1 82 + 1 ----------------------AUGUGGCAGCCGAGCACACAGCACAUCCUGACGC---UGAUCCUCUGCAGCAGCCUUUGCCUAAUCAGCGCGAGUCCUCUUCCAC ----------------------..((((.....(((.((.(((......))).(((---((((.....((((......))))...)))))))...)).)))..)))) ( -19.20) >DroSec_CAF1 1 85 + 1 ----------------------AUGAGGCAGCCAAGUAGACAGCACAUCCUGGCGCUCCUGAUCCUCGGCAGCGCCGCCUGCCUCAUCAGCGCCGUACCGCUCCCGC ----------------------(((((((((.(..((.....)).......((((((.(((.....))).))))))).))))))))).((((......))))..... ( -32.80) >DroSim_CAF1 179 107 + 1 ACACGCACGCAACAGAGACAGCAUGAGGCAGCCAAGUAGACAGCACAUCCUGGCGCUCCUGAUCCUCGGCAGCGCCGCCUGCCUCAUCAGCGCCGUACCGCUCCCGC ........((..........(.(((((((((.(..((.....)).......((((((.(((.....))).))))))).))))))))))((((......))))...)) ( -34.80) >DroEre_CAF1 1 85 + 1 ----------------------AUGAGCCAGCCAAGCAGACAGCACAUCCUGGCGCUCCUGAUCCUCGGCAGCGCCGCCUGCCUCAUCACCGCCGUACCGCUCCCGC ----------------------(((((.(((.(..((.....)).......((((((.(((.....))).))))))).))).)))))....((......))...... ( -24.90) >DroMoj_CAF1 21 92 + 1 ------------CAACAACAAAAUGUGGCAGCCGAGUACACAGCAUUUCCUGGCGC---UGAUCUUCUGCAGCGCCGUCUGCCUGCUUAGCGCAAGUCCUCUUCCAU ------------............(((((((.(..((.....)).......(((((---((........)))))))).))))).))...((....)).......... ( -24.60) >consensus ______________________AUGAGGCAGCCAAGUAGACAGCACAUCCUGGCGCUCCUGAUCCUCGGCAGCGCCGCCUGCCUCAUCAGCGCCGUACCGCUCCCGC ......................(((((((((.(..((.....)).......((((((.(((.....))).))))))).))))))))).................... (-20.23 = -22.37 + 2.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:42 2006