Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,836,791 – 9,836,891 |
Length | 100 |
Max. P | 0.755239 |
Location | 9,836,791 – 9,836,891 |
---|---|
Length | 100 |
Sequences | 4 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 92.26 |
Mean single sequence MFE | -22.48 |
Consensus MFE | -18.24 |
Energy contribution | -18.30 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.05 |
Mean z-score | -1.85 |
Structure conservation index | 0.81 |
SVM decision value | 0.49 |
SVM RNA-class probability | 0.755239 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9836791 100 - 22224390 AUUUAAAAAAUCAUAAUAAAUGUAUUCGGGGAAACUCCGAAUGCUCAAGACGUUAAGUCAUCUUCGGCUGAGGCAUGCAAGAAAUGAACUUGAAAGCGUA .....................(((((((((....).)))))))).....((((((((((((.((..((........))..)).))).)))))...)))). ( -24.40) >DroSec_CAF1 15518 98 - 1 AUUUAA-AAAUCACAAUAAAUGAACUCGGGGAAACUCCGAAUGCCCAAGA-GCUAAGUCAUCUUCGGCUGAGGCAUGCAAGAAAUGAACUUGAAAGCGUA ......-..................(((((....).))))(((((....(-((((((....))).))))..))))).((((.......))))........ ( -19.80) >DroEre_CAF1 13537 98 - 1 AAUUAA-AAAUCAUAACAAAUGAACGCGGGGAAACUCCGAAAGCCCAAGA-GCCAAGUCAUCUUCGGCUGAGGCAUGCAAGAAAUGAACUUGAAAGCGUA ......-...((((.....))))(((((((....).))....(((....(-((((((....))).))))..)))...((((.......))))...)))). ( -23.60) >DroYak_CAF1 15988 98 - 1 AUUUAA-AAGUCAAAAUAAAUGAACUCGGGGAAACUCCGAAAGCCCAAGA-GCCAAGUCAUCUUCGGCUGAGGCAGGCAAGAAAUGAACUUGAAAGCGUA .(((((-...(((............(((((....).))))..(((.....-(((.((((......))))..))).)))......)))..)))))...... ( -22.10) >consensus AUUUAA_AAAUCAUAAUAAAUGAACUCGGGGAAACUCCGAAAGCCCAAGA_GCCAAGUCAUCUUCGGCUGAGGCAUGCAAGAAAUGAACUUGAAAGCGUA ..........(((............(((((....).))))..(((.((((.(......).)))).)))))).((...((((.......))))...))... (-18.24 = -18.30 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:40 2006