Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,835,454 – 9,835,574 |
Length | 120 |
Max. P | 0.819969 |
Location | 9,835,454 – 9,835,574 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 98.33 |
Mean single sequence MFE | -24.84 |
Consensus MFE | -24.24 |
Energy contribution | -23.92 |
Covariance contribution | -0.32 |
Combinations/Pair | 1.07 |
Mean z-score | -1.32 |
Structure conservation index | 0.98 |
SVM decision value | 0.68 |
SVM RNA-class probability | 0.819969 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9835454 120 - 22224390 CCGCCAAAUAAAGCCCCUCGCCAAUCGAUUUCAGCACUGCACACGAAACCUCUCGAAACGCAAUUUGGAAAUUGGCAAUCAAAAACGUUUUUGUGUUAACCAACUCGCAUUAAUUGGGCA ............((((...((((((...((((((...(((...(((......)))....)))..))))))))))))..........(((..((((..........))))..))).)))). ( -24.50) >DroSec_CAF1 14189 120 - 1 CCGCCAGAUAAAGCCCCUCGCCAAUCGAUUUCAGCACUGCACACGAAACCUCUCGAAACGCAACUUGAAAAUUGGCAAUCAAAAACGUUUUUGUGUUAACCAACUCGCAUUAAUUGGGCA ............((((...((((((...((((((...(((...(((......)))....)))..))))))))))))..........(((..((((..........))))..))).)))). ( -25.00) >DroSim_CAF1 12813 120 - 1 CCGCCAGAUAAAGCCCCUCGCCAAUCGAUUUCAGCACUGCACACGAAACCUCUCGAAACGCAACUUGAAAAUUGGCAAUCAAAAACGUUUUUGUGUUAACCAACUCGCAUUAAUUGGGCA ............((((...((((((...((((((...(((...(((......)))....)))..))))))))))))..........(((..((((..........))))..))).)))). ( -25.00) >DroEre_CAF1 12247 120 - 1 CCGCCAGAUAAAGCCCCUCGCCAAUCGAUUUCAGCACUGCACACGAAACCUCUCGAAACGCAACUUGAAAAUUGGCAAUCAAAAACGUUUUUGUGUUAACCAACUCGUAUUAAUUGGGCA ............((((...((((((...((((((...(((...(((......)))....)))..))))))))))))........(((..((.((....)).))..))).......)))). ( -24.70) >DroYak_CAF1 14662 120 - 1 CCGCUAGAUAAAGCCCCUCGCCAAUCGAUUUCAGCACUGCACACGAAACCUCUCGAAACGCAACUUGAAAAUUGGCAAUCAAAAACGUUUUUGUGUUAACCAACUCGCAUUAAUUGGGCA ............((((...((((((...((((((...(((...(((......)))....)))..))))))))))))..........(((..((((..........))))..))).)))). ( -25.00) >consensus CCGCCAGAUAAAGCCCCUCGCCAAUCGAUUUCAGCACUGCACACGAAACCUCUCGAAACGCAACUUGAAAAUUGGCAAUCAAAAACGUUUUUGUGUUAACCAACUCGCAUUAAUUGGGCA ............((((...((((((...((((((...(((...(((......)))....)))..))))))))))))..........(((..((((..........))))..))).)))). (-24.24 = -23.92 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:37 2006