Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,833,564 – 9,833,673 |
Length | 109 |
Max. P | 0.955780 |
Location | 9,833,564 – 9,833,673 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 93.91 |
Mean single sequence MFE | -34.88 |
Consensus MFE | -30.50 |
Energy contribution | -30.10 |
Covariance contribution | -0.40 |
Combinations/Pair | 1.11 |
Mean z-score | -1.66 |
Structure conservation index | 0.87 |
SVM decision value | 1.46 |
SVM RNA-class probability | 0.955780 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9833564 109 - 22224390 UCUAUGAAGUGUUCCACCACUUAGCGCUUCGAGGGUCUAACUGGGCCCAAAAGGUUGGCCACAAAAUUUCCGCACUGUCAUGCUGGCCAUGCACUUUGGCCAAAAGCCA ....(((((((((.........))))))))).((((((....)))))).......((((............(((......)))((((((.......))))))...)))) ( -33.90) >DroSec_CAF1 12358 108 - 1 UCUCUGAAGUGUUCCACCACUUAGCGCCUUGAGGGUCUAACUGGGCCCAA-AGGUUGGCCACAAAAUUUCCGCCCUGUCAUGCUGGCCAUGCACUUUGGCCAAAAGCCA .....(((((((.............(((((..((((((....)))))).)-))))((((((((..((.........))..)).)))))).)))))))(((.....))). ( -33.50) >DroSim_CAF1 11292 108 - 1 UCUAUGAAGUGUUCCACCACUUAGCGCCUUGAGGGUCUAACUGGGCCCAA-AGGUUGGCCACAAAAUUUCCGCCCUGUCAUGCUGGCCAUGCACUUUGGCCAAAAGCCA .....(((((((.............(((((..((((((....)))))).)-))))((((((((..((.........))..)).)))))).)))))))(((.....))). ( -33.50) >DroEre_CAF1 10401 108 - 1 UCUGUGGAGUGGCCCACCACUUGGCACUUCGAGGGUCUAACUGGGCCCAA-AGGCUGGCCACAAAAUUUCCGCCCUGUCAUGCUGGCCAUGCACUUUGGCCAAAAGCCA ..(((.((((((....)))))).)))......((((((....))))))..-.(((((((............))).........((((((.......))))))..)))). ( -39.20) >DroYak_CAF1 12762 108 - 1 UCUAUUGAGUGUUCCAGCACUUCGCACUUCGAGGGUCUAACUGGGCCCAA-AGGUUGGCCACAAAAUUUCCGCCCUGUCAUGCUGGCCAUGCACUUUGGCCAAAAGCCA ......((((((.(((((((((((.....))))).....((.((((..((-(..(((....)))..)))..)))).))..))))))....))))))((((.....)))) ( -34.30) >consensus UCUAUGAAGUGUUCCACCACUUAGCGCUUCGAGGGUCUAACUGGGCCCAA_AGGUUGGCCACAAAAUUUCCGCCCUGUCAUGCUGGCCAUGCACUUUGGCCAAAAGCCA ......(((((......)))))...((((...((((((....))))))...))))((((............((........))((((((.......))))))...)))) (-30.50 = -30.10 + -0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:36 2006