Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,831,839 – 9,831,956 |
Length | 117 |
Max. P | 0.785588 |
Location | 9,831,839 – 9,831,956 |
---|---|
Length | 117 |
Sequences | 3 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 88.00 |
Mean single sequence MFE | -32.62 |
Consensus MFE | -23.40 |
Energy contribution | -23.40 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.08 |
Mean z-score | -2.29 |
Structure conservation index | 0.72 |
SVM decision value | 0.15 |
SVM RNA-class probability | 0.605727 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9831839 117 + 22224390 UCCAGGGCCGAUGAGGGUCCCCAAAGAAGUCGGAACAUUUGGCAGAGGUAUUCAAAUUCUGCAUAUAUGUUAACUUCGAGUUUGCAUGCGAAUUAAAAGAGGACCAAAAUGGCCAGA .....(((((.(...(((((.(...(((((...(((((...((((((.........))))))....))))).))))).((((((....))))))....).)))))..).)))))... ( -38.10) >DroSec_CAF1 10711 107 + 1 UCCAGGGCCGUUGAGGGUCCCCAAAGAAGUCG-AACAAAUGGCAGA---------AUUCUACAUAUAUGGUAACUUUGAGUUUUUAUGCGAAUUAAAAGGGAACCAAAAUGGCCAGA .....(((((((...(((.(((......((((-......))))..(---------((((..((((......(((.....)))..)))).)))))....))).)))..)))))))... ( -27.40) >DroSim_CAF1 9626 116 + 1 UCCAGGGCCGUUGAGGGUCCCCAAAGAAGUCG-AACAAAUGGCAGAGGUAUUCAAAUUCUACAUAUAUGGUAACUUUGAGUUUUUAUGCGAAUUAAAAGGGAACCCAAAUGGCCAGA .....(((((((..((((.(((......((((-......))))....((((..((((((..................))))))..)))).........))).)))).)))))))... ( -32.37) >consensus UCCAGGGCCGUUGAGGGUCCCCAAAGAAGUCG_AACAAAUGGCAGAGGUAUUCAAAUUCUACAUAUAUGGUAACUUUGAGUUUUUAUGCGAAUUAAAAGGGAACCAAAAUGGCCAGA .....(((((((...(((.(((......((((.......))))......................(((((.(((.....))).)))))..........))).)))..)))))))... (-23.40 = -23.40 + 0.00)
Location | 9,831,839 – 9,831,956 |
---|---|
Length | 117 |
Sequences | 3 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 88.00 |
Mean single sequence MFE | -29.26 |
Consensus MFE | -23.97 |
Energy contribution | -23.31 |
Covariance contribution | -0.66 |
Combinations/Pair | 1.14 |
Mean z-score | -2.25 |
Structure conservation index | 0.82 |
SVM decision value | 0.57 |
SVM RNA-class probability | 0.785588 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9831839 117 - 22224390 UCUGGCCAUUUUGGUCCUCUUUUAAUUCGCAUGCAAACUCGAAGUUAACAUAUAUGCAGAAUUUGAAUACCUCUGCCAAAUGUUCCGACUUCUUUGGGGACCCUCAUCGGCCCUGGA ...((((.....(((((((.........(....)......(((((((((((....(((((...........)))))...)))))..))))))...)))))))......))))..... ( -31.30) >DroSec_CAF1 10711 107 - 1 UCUGGCCAUUUUGGUUCCCUUUUAAUUCGCAUAAAAACUCAAAGUUACCAUAUAUGUAGAAU---------UCUGCCAUUUGUU-CGACUUCUUUGGGGACCCUCAACGGCCCUGGA ...((((.....(((((((.......(((.((((((((.....))).........((((...---------.))))..))))).-))).......)))))))......))))..... ( -26.24) >DroSim_CAF1 9626 116 - 1 UCUGGCCAUUUGGGUUCCCUUUUAAUUCGCAUAAAAACUCAAAGUUACCAUAUAUGUAGAAUUUGAAUACCUCUGCCAUUUGUU-CGACUUCUUUGGGGACCCUCAACGGCCCUGGA ...((((....((((((((.......(((.((((((((.....))).........(((((...........)))))..))))).-))).......)))))))).....))))..... ( -30.24) >consensus UCUGGCCAUUUUGGUUCCCUUUUAAUUCGCAUAAAAACUCAAAGUUACCAUAUAUGUAGAAUUUGAAUACCUCUGCCAUUUGUU_CGACUUCUUUGGGGACCCUCAACGGCCCUGGA ...((((.....(((((((.......(((......(((.....))).........(((((...........))))).........))).......)))))))......))))..... (-23.97 = -23.31 + -0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:32 2006