Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,827,282 – 9,827,376 |
Length | 94 |
Max. P | 0.558387 |
Location | 9,827,282 – 9,827,376 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 80.80 |
Mean single sequence MFE | -20.88 |
Consensus MFE | -15.84 |
Energy contribution | -16.45 |
Covariance contribution | 0.61 |
Combinations/Pair | 1.22 |
Mean z-score | -1.16 |
Structure conservation index | 0.76 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.558387 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9827282 94 - 22224390 -----------------UCAGAUCGUAAAGUUGCCAUUAGAUGGCUGAAUUAAAAGCCAACAUCUGAGGGCAGUCGAAGCAUUAAAGGGCACAACAUUUGCACAAAGUGAA -----------------.......(((((((((((.((((((((((........)))))...))))).))))).)...((........))......))))).......... ( -22.60) >DroSec_CAF1 3670 94 - 1 -----------------UCAGAUCGUAAAGUUGCCAUUAGAUGGCUGAAUUAAAAGCCAAAAUCUGAGGGCAGUCGAAGCAUUAAAGGGCACAACAUUUGCACAAAGUGAA -----------------.......(((((((((((.((((((((((........)))))...))))).))))).)...((........))......))))).......... ( -22.60) >DroSim_CAF1 4920 94 - 1 -----------------UCAGAUCGUAAAGUUGCCAUUAGAUGGCUGAAUUAAAAGCCAAAAUCUGAGGGCAGUCGAAGCAUUAAAGGGCACAACAUUUGCACAAAGUGAA -----------------.......(((((((((((.((((((((((........)))))...))))).))))).)...((........))......))))).......... ( -22.60) >DroEre_CAF1 3709 93 - 1 -----------------UCAGAUCGUAAAGUUGCCAUUAGAUGACUGAAUUAAAGGCCAAAA-CUGAGGGCAGUCGAAGCAUUAAAGGGCACAACAUUUGCACAGAGUGAA -----------------.......(((((((((........((((((..((...((......-)).))..))))))..((........)).)))).))))).......... ( -16.00) >DroWil_CAF1 20033 103 - 1 UGUAUGGAUGCUUGGGAGUAGAUA--AUGGAUGCCAUUUAAUUGCUU-----GAGGCAAAGAUCUCAUAACAUUUGGAGCAUUAAAGGGCGCAAAGUUUGAACAAUCUGU- ........(((((.(.(((((..(--((((...)))))...))))))-----.))))).((((.(((.(((.((((..((........)).))))))))))...))))..- ( -18.90) >DroYak_CAF1 6758 94 - 1 -----------------UCAGAUCGUAAAGUUGCCAUUAGAUGGCUGAAUUAAAAGCCAAAAUCUGAGGGCAGUCGAAGCAUUAAAGGGCACAACAUUUGCACAAAGUGAA -----------------.......(((((((((((.((((((((((........)))))...))))).))))).)...((........))......))))).......... ( -22.60) >consensus _________________UCAGAUCGUAAAGUUGCCAUUAGAUGGCUGAAUUAAAAGCCAAAAUCUGAGGGCAGUCGAAGCAUUAAAGGGCACAACAUUUGCACAAAGUGAA ........................(((((((((((.((((((((((........)))))...))))).))))).)...((........))......))))).......... (-15.84 = -16.45 + 0.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:29 2006