Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,824,804 – 9,824,908 |
Length | 104 |
Max. P | 0.622703 |
Location | 9,824,804 – 9,824,908 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 79.07 |
Mean single sequence MFE | -20.73 |
Consensus MFE | -13.56 |
Energy contribution | -13.72 |
Covariance contribution | 0.16 |
Combinations/Pair | 1.07 |
Mean z-score | -1.64 |
Structure conservation index | 0.65 |
SVM decision value | 0.18 |
SVM RNA-class probability | 0.622703 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9824804 104 + 22224390 UCCAGGAAAUCUUCCUGGAAGCGCAAGUCAUGAGCCUGGCGUUAAAAAAAAUCAAGCGUUCCAUACUAAAGACAUGCAUUUUUAGCUUAAACUUAAAAGG----UUAA (((((((.....)))))))...(((.(((...((..(((((((...........))))..)))..))...))).)))....(((((((.........)))----)))) ( -24.30) >DroSec_CAF1 1381 98 + 1 UCCAGGAAAUCUUCCUGGAAGCGCAAGUCAUGAGCCUGGCGUUAAA-AAAAUCAAGCAUUGCAUACUAAAGACAUGCAUUUUUAACUUAAACUUA---------UUUA (((((((.....))))))).((....)).(((((..(((.((((((-((..........(((((.........))))))))))))))))..))))---------)... ( -20.80) >DroSim_CAF1 2355 98 + 1 UCCAGGAAAUCUUCCUGGAAGCGCAAGUCAUGAGCCUUGCGUUAAA-AAAAUCAAGCCUUGCAUACUAAAGACAUGCAUUUUUAACUUACACUUA---------UUUA (((((((.....)))))))((((((((.(....).))))))))..(-(((((((.(.(((........))).).)).))))))............---------.... ( -23.80) >DroEre_CAF1 1373 92 + 1 UCCAGGAAGUCUUCCUGCAAGCGUAAGUCAUGAGCCUGGCGUUAA---AAAUCAAGUUUUGCAUACUUAAGACUUUUACUUG-------------AAAUGAUAUUUAA ..(((((.....)))))((((...(((((.((((....(((....---...........)))...)))).)))))...))))-------------............. ( -17.96) >DroYak_CAF1 4281 106 + 1 UCCAAGAAAUCCUCCUGGAAGCGUAAGUCAUGAGCCUGGCGUUAAA--AAAUCAAGUGUUGCAUACUUAAGACAUGCACUUUAAACGUAAACAUAAAAGGAUAACUAA (((......(((....))).((((((((((((.((...))......--.....((((((...))))))....)))).))))...))))..........)))....... ( -16.80) >consensus UCCAGGAAAUCUUCCUGGAAGCGCAAGUCAUGAGCCUGGCGUUAAA_AAAAUCAAGCGUUGCAUACUAAAGACAUGCAUUUUUAACUUAAACUUAAAA_G____UUAA (((((((.....)))))))(((((.((.(....).)).)))))................................................................. (-13.56 = -13.72 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:27 2006