Locus 3676

Sequence ID X_DroMel_CAF1
Location 9,824,262 – 9,824,358
Length 96
Max. P 0.506019
window6025

overview

Window 5

Location 9,824,262 – 9,824,358
Length 96
Sequences 6
Columns 100
Reading direction reverse
Mean pairwise identity 84.04
Mean single sequence MFE -27.60
Consensus MFE -20.29
Energy contribution -19.97
Covariance contribution -0.33
Combinations/Pair 1.38
Mean z-score -1.66
Structure conservation index 0.74
SVM decision value -0.05
SVM RNA-class probability 0.506019
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9824262 96 - 22224390
---UUUAAAAUGGAUU-UAUUUAGGGUGAAGGUGGUUCCGAUGUGGGUGCCUUAAUUGGUGCCCUUACCGGUGUGAUAUCCACUUUAUUUGGAGUAAGUA
---..........(((-(((((..(((((((.(((..(((.((.(((..((......))..))).)).)))........))))))))))..)))))))). ( -30.20)
>DroPse_CAF1 10007 99 - 1
CACAUCUAAAUCGAUU-UCUCUAGGGAGAAGGCGGCUCGGACGUGGGCGCCUUGAUUGGAGCUCUCACUGGCGUCGUUUCCACUUUAUUUGGGGUGAGUC
(((.((..(..((.((-((((....)))))).))..)..)).)))((((((.(((.........)))..)))))).....((((((....)))))).... ( -29.50)
>DroSec_CAF1 832 96 - 1
---GUUAAUAUGUAUU-UUUUUAGGGUGAAGGUGGUUCAGAUGUGGGUGCCUUAAUUGGUGCCCUAACUGGUGUGGUUUCCACUUUAUUUGGAGUAAGUA
---.....(((.((((-((..((((((((((.((..((((.((.(((..((......))..))))).))))..)).))).)))))))...)))))).))) ( -25.90)
>DroSim_CAF1 1806 96 - 1
---GUUAAUAUGGAUU-UUUUUAGGGUGAAGGUGGUUCCGAUGUGGGUGCCUUAAUUGGUGCCCUAACUGGUGUGGUUUCCACUUUAUUUGGAGUAAGUA
---..........(((-((((((((...(((((((..(((..(((((..((......))..)))..)).....)))...))))))).))))))).)))). ( -26.30)
>DroEre_CAF1 822 96 - 1
---GUUAAAGUGGAUU-UUUUUAGGGCGAAGGUGGUUCCGAUGUGGGUGCUCUAAUUGGUGCCCUAACUGGUGUGAUUUCCACUUUAUUUGGAGUAAGUA
---..(((((((((..-((.((((.(((..((.....))..)))(((..((......))..)))...))))...))..)))))))))............. ( -26.40)
>DroYak_CAF1 3735 97 - 1
---GUUUAAAGGGAUCUUUUCUAGGGUGAAGGUGGUUCCGAUGUGGGUGCUCUAAUUGGCGCCCUAACUGGUGUGAUUUCCGCAUUGUUUGGAGUAAGUA
---.(((((((((((((((((......))))).))))))((((((((((((......))))))).....((........))))))).))))))....... ( -27.30)
>consensus
___GUUAAAAUGGAUU_UUUUUAGGGUGAAGGUGGUUCCGAUGUGGGUGCCUUAAUUGGUGCCCUAACUGGUGUGAUUUCCACUUUAUUUGGAGUAAGUA
..................(((((((...(((((((..(((....(((((((......)))))))....)))........))))))).)))))))...... (-20.29 = -19.97 +  -0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:27 2006