Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,818,269 – 9,818,372 |
Length | 103 |
Max. P | 0.971778 |
Location | 9,818,269 – 9,818,372 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 84.26 |
Mean single sequence MFE | -26.91 |
Consensus MFE | -16.60 |
Energy contribution | -17.72 |
Covariance contribution | 1.12 |
Combinations/Pair | 1.07 |
Mean z-score | -3.30 |
Structure conservation index | 0.62 |
SVM decision value | 1.68 |
SVM RNA-class probability | 0.971778 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9818269 103 - 22224390 U---ACAUUUUUUAUUUGUCAUUUCAACGGAUGCGCGCAUUAAUUUUGCUUUAUCUGGUCCCCUCGCUCG-------UCUG-UCGUCACAUGAAAUGAUAAAUAAAAAUAAAAC .---....(((((((((((((((((((((((((.(((((.......))).......((...))..)).))-------))))-).......))))))))))))))))))...... ( -29.51) >DroSec_CAF1 19746 103 - 1 U---ACAUUUUUUAUUUGUCAUUUCAACGGAUGCGCGCAUUAAUUUUGCUUUAUCUGGGCCCCUCGCUCG-------UCUG-UCGUCACAUGAAAUGAGAAAUAAAAUUAAAAC .---.....((((((((.(((((((((((((((.(((((.......))).......(((...))))).))-------))))-).......)))))))).))))))))....... ( -27.41) >DroSim_CAF1 9737 103 - 1 U---ACAUUUUUUAUUUUUCAUUUCAACGGAUGCGCGCAUUAAUUUUGCUUUAUCUGGGCCCCUCGCUCG-------UCUG-UCGUCACAUGAAAUGAGAAAUAAAAUUAAAAC .---.....((((((((((((((((((((((((.(((((.......))).......(((...))))).))-------))))-).......)))))))))))))))))....... ( -28.91) >DroEre_CAF1 11061 108 - 1 U---ACAUUUUUUAUUUGUCAUUUCAACGGAUGCGCGCAUUAAUUUUGCUUUAUCUGGGCCCCUCGCU--CUGGCGCUCUG-UCGUCACAUGAAAUGAGAAAUAAAACUAAAAC .---.....((((((((.(((((((((((((.(((((((.......))).......((((.....)))--)..))))))))-).......)))))))).))))))))....... ( -32.21) >DroAna_CAF1 9550 107 - 1 UUAAAAGUUUUUUAUUUGCUAUUUCAACGGAUGCGCGCAUUAAUUUUGCUUUAUAUGGAGCCCUCUGUCC-------GCAAUACGUUGCAUAAAAACCAAAAUUAAACCGAAAA ...........................(((.((....))(((((((((.(((.((((.(((....((...-------.))....))).)))).))).))))))))).))).... ( -16.50) >consensus U___ACAUUUUUUAUUUGUCAUUUCAACGGAUGCGCGCAUUAAUUUUGCUUUAUCUGGGCCCCUCGCUCG_______UCUG_UCGUCACAUGAAAUGAGAAAUAAAACUAAAAC .........((((((((.((((((((...((((...(((.......))).......((((.....))))..............))))...)))))))).))))))))....... (-16.60 = -17.72 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:21 2006