Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,816,207 – 9,816,337 |
Length | 130 |
Max. P | 0.998455 |
Location | 9,816,207 – 9,816,302 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 97.69 |
Mean single sequence MFE | -30.76 |
Consensus MFE | -29.74 |
Energy contribution | -29.42 |
Covariance contribution | -0.32 |
Combinations/Pair | 1.08 |
Mean z-score | -1.76 |
Structure conservation index | 0.97 |
SVM decision value | 2.28 |
SVM RNA-class probability | 0.991589 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9816207 95 + 22224390 CGUUGGCAGCGAUUCGAGCGGAACGCCGGCGCAAA-AAACACGUUUUUGAGCGGUUUUGAGCGCAAAUUCGAACGGAAAGCGCUCAAUAAAGUGCA .........((.(((((((((....)))((((..(-((((.((((....)))))))))..))))...))))))))....(((((......))))). ( -30.40) >DroSec_CAF1 11502 95 + 1 CGUUGGCAGCGAUUCGAGCGGAACGCCGGCGCAAA-AAACACGUUUUUGAGCGGGUUUGAGCGCAAAUUCGAACGGAAAGCGCUCAAUAAAGUGCA .((((((.((.......)).....))))))(((..-((((.((((....)))).))))((((((...(((....)))..)))))).......))). ( -29.40) >DroSim_CAF1 7293 95 + 1 CGUUGGCAGCGAUUCGAGCGGAACGCCGGCGCAAA-AAACACGUUUUUGAGCGGGUUUGAGCGCAAAUUCGAACGGAAAGCGCUCAAUAAAGUGCA .((((((.((.......)).....))))))(((..-((((.((((....)))).))))((((((...(((....)))..)))))).......))). ( -29.40) >DroEre_CAF1 7437 95 + 1 CGUCGGCAGCGAUUCGAGCGGAACGCCGGCGCAAA-AAACACGUUUUUGAGCGGUUUUGAGCGCAAAUUCGAAUGGAAAGCGCUCAAUAAAGUGCA .((((((.((.......)).....))))))(((.(-((((.((((....)))))))))((((((...(((.....))).)))))).......))). ( -31.90) >DroYak_CAF1 9389 96 + 1 CGCUGGCAGCGAUUCGAGCGGAACGCCGGCGCAAAAAAACACGUUUUUGAGCGGUUUUGAGCGCAAAUUCGAACGGAAAGCGCUCAAUAAAGUGCA .((((((.((.......)).....))))))(((..(((((.((((....)))))))))((((((...(((....)))..)))))).......))). ( -32.70) >consensus CGUUGGCAGCGAUUCGAGCGGAACGCCGGCGCAAA_AAACACGUUUUUGAGCGGUUUUGAGCGCAAAUUCGAACGGAAAGCGCUCAAUAAAGUGCA .((((((.((.......)).....))))))(((........((((....))))...((((((((...(((....)))..)))))))).....))). (-29.74 = -29.42 + -0.32)
Location | 9,816,233 – 9,816,337 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 98.28 |
Mean single sequence MFE | -33.20 |
Consensus MFE | -31.68 |
Energy contribution | -31.68 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.21 |
Structure conservation index | 0.95 |
SVM decision value | 3.11 |
SVM RNA-class probability | 0.998455 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9816233 104 + 22224390 CGGCGCAAA-AAACACGUUUUUGAGCGGUUUUGAGCGCAAAUUCGAACGGAAAGCGCUCAAUAAAGUGCAAAACCAGCCGCUGGAGAUGUUAAGUCACCGGUGUU ..((((..(-((((.((((....)))))))))((((((...(((....)))..))))))......)))).........((((((.(((.....))).)))))).. ( -33.40) >DroSec_CAF1 11528 104 + 1 CGGCGCAAA-AAACACGUUUUUGAGCGGGUUUGAGCGCAAAUUCGAACGGAAAGCGCUCAAUAAAGUGCAAAACCAGCCGCUGGAGAUGUUAAGUCACCGGUGUU ..((((...-((((.((((....)))).))))((((((...(((....)))..))))))......)))).........((((((.(((.....))).)))))).. ( -32.60) >DroSim_CAF1 7319 104 + 1 CGGCGCAAA-AAACACGUUUUUGAGCGGGUUUGAGCGCAAAUUCGAACGGAAAGCGCUCAAUAAAGUGCAAAACCAGCCGCUGGAGAUGUUAAGUCACCGGUGUU ..((((...-((((.((((....)))).))))((((((...(((....)))..))))))......)))).........((((((.(((.....))).)))))).. ( -32.60) >DroEre_CAF1 7463 104 + 1 CGGCGCAAA-AAACACGUUUUUGAGCGGUUUUGAGCGCAAAUUCGAAUGGAAAGCGCUCAAUAAAGUGCAAAACCAGCCGCUGGAGAUGUUAAGUCACCGGUGCU ..((((..(-((((.((((....)))))))))((((((...(((.....))).))))))......))))......(((.(((((.(((.....))).)))))))) ( -33.70) >DroYak_CAF1 9415 105 + 1 CGGCGCAAAAAAACACGUUUUUGAGCGGUUUUGAGCGCAAAUUCGAACGGAAAGCGCUCAAUAAAGUGCAAAACCAGCCGCUGGAGAUGUUAAGUCACCGGUGUU .(((((..(((((....)))))..))((((((((((((...(((....)))..)))))))..........))))).)))(((((.(((.....))).)))))... ( -33.70) >consensus CGGCGCAAA_AAACACGUUUUUGAGCGGUUUUGAGCGCAAAUUCGAACGGAAAGCGCUCAAUAAAGUGCAAAACCAGCCGCUGGAGAUGUUAAGUCACCGGUGUU ..((((.........((((....))))...((((((((...(((....)))..))))))))....)))).........((((((.(((.....))).)))))).. (-31.68 = -31.68 + -0.00)
Location | 9,816,233 – 9,816,337 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 98.28 |
Mean single sequence MFE | -29.08 |
Consensus MFE | -28.60 |
Energy contribution | -28.60 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.67 |
Structure conservation index | 0.98 |
SVM decision value | 1.93 |
SVM RNA-class probability | 0.982966 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9816233 104 - 22224390 AACACCGGUGACUUAACAUCUCCAGCGGCUGGUUUUGCACUUUAUUGAGCGCUUUCCGUUCGAAUUUGCGCUCAAAACCGCUCAAAAACGUGUUU-UUUGCGCCG .....(((((....(((((....(((((..(((.....)))...((((((((.(((.....)))...))))))))..))))).......))))).-....))))) ( -29.20) >DroSec_CAF1 11528 104 - 1 AACACCGGUGACUUAACAUCUCCAGCGGCUGGUUUUGCACUUUAUUGAGCGCUUUCCGUUCGAAUUUGCGCUCAAACCCGCUCAAAAACGUGUUU-UUUGCGCCG .....(((((....(((((....((((((.......))......((((((((.(((.....)))...))))))))...)))).......))))).-....))))) ( -29.20) >DroSim_CAF1 7319 104 - 1 AACACCGGUGACUUAACAUCUCCAGCGGCUGGUUUUGCACUUUAUUGAGCGCUUUCCGUUCGAAUUUGCGCUCAAACCCGCUCAAAAACGUGUUU-UUUGCGCCG .....(((((....(((((....((((((.......))......((((((((.(((.....)))...))))))))...)))).......))))).-....))))) ( -29.20) >DroEre_CAF1 7463 104 - 1 AGCACCGGUGACUUAACAUCUCCAGCGGCUGGUUUUGCACUUUAUUGAGCGCUUUCCAUUCGAAUUUGCGCUCAAAACCGCUCAAAAACGUGUUU-UUUGCGCCG .....(((((....(((((....(((((..(((.....)))...((((((((.(((.....)))...))))))))..))))).......))))).-....))))) ( -29.20) >DroYak_CAF1 9415 105 - 1 AACACCGGUGACUUAACAUCUCCAGCGGCUGGUUUUGCACUUUAUUGAGCGCUUUCCGUUCGAAUUUGCGCUCAAAACCGCUCAAAAACGUGUUUUUUUGCGCCG .....(((((....(((((....(((((..(((.....)))...((((((((.(((.....)))...))))))))..))))).......)))))......))))) ( -28.60) >consensus AACACCGGUGACUUAACAUCUCCAGCGGCUGGUUUUGCACUUUAUUGAGCGCUUUCCGUUCGAAUUUGCGCUCAAAACCGCUCAAAAACGUGUUU_UUUGCGCCG .....(((((....(((((....((((((.......))......((((((((.(((.....)))...))))))))...)))).......)))))......))))) (-28.60 = -28.60 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:20 2006