Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,814,575 – 9,814,684 |
Length | 109 |
Max. P | 0.960734 |
Location | 9,814,575 – 9,814,684 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 93.14 |
Mean single sequence MFE | -22.36 |
Consensus MFE | -19.60 |
Energy contribution | -19.84 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.04 |
Mean z-score | -1.67 |
Structure conservation index | 0.88 |
SVM decision value | 1.52 |
SVM RNA-class probability | 0.960734 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9814575 109 + 22224390 UAGAGCAAAAUCAGGUCAGUUGUUGAAAGCUGAACAAGCAGUUAAACGAAGGGACUAACAACAAGUUUAACUACUACUUGAAUGGAAAAGUGGAAAACUGUGAGGCAGG ....((.....(((.((((((......))))))......((((((((....(......).....)))))))).((((((........))))))....)))....))... ( -24.40) >DroSec_CAF1 9889 103 + 1 UAGAGCAAAAUCAGGUCAGUUGUUGAAAGCUGAACAAGCAGUUAAACGAAGGGACUUACAACAAGUUUAACUACAACUUGAAUGGAAAAGUGGAAAACUGUGA------ ....((....((...((((((((.....(((.....)))((((((((....(......).....))))))))))))).)))...))..(((.....)))))..------ ( -19.10) >DroSim_CAF1 5680 103 + 1 UAGAGCAAAAUCAGGUCAGUUGUUGAAAGCUGAACAAGCAGUUAAACGAAGGGACUUACAACAAGUUUAACUACUACUUGAAUGGAAAAGUGGAAAACUGUGA------ ...........(((.((((((......))))))......((((((((....(......).....)))))))).((((((........))))))....)))...------ ( -20.90) >DroEre_CAF1 5807 108 + 1 UGGAGCAAAAUCAGGUCAGUUGUUGAAAGCUGAACAAGCAGUUAAACGAAGGGAUUUACAACAAGUUUAACUACUACUUGAACGGAAAAGUGGAAAACUGUGU-GCAGA ....(((....(((.((((((......))))))......((((((((....(......).....)))))))).((((((........))))))....)))..)-))... ( -25.70) >DroYak_CAF1 7636 108 + 1 UAGAGCAAAAUCAGGUCAGUUGUUGAAAGCUGAACGAGCAGUUGAACGAAGGGAUUUACAACAAGUUUAACUACUACUCGAAUGGAAAAGUGGAAAACUGUGA-GCAGA ....((.....(((.((((((......)))))).((((.((((((((....(......).....))))))))....)))).................)))...-))... ( -21.70) >consensus UAGAGCAAAAUCAGGUCAGUUGUUGAAAGCUGAACAAGCAGUUAAACGAAGGGACUUACAACAAGUUUAACUACUACUUGAAUGGAAAAGUGGAAAACUGUGA_GCAG_ ...........(((.((((((......))))))......((((((((....(......).....)))))))).((((((........))))))....)))......... (-19.60 = -19.84 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:14 2006