Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,814,342 – 9,814,437 |
Length | 95 |
Max. P | 0.608509 |
Location | 9,814,342 – 9,814,437 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 87.47 |
Mean single sequence MFE | -22.63 |
Consensus MFE | -16.01 |
Energy contribution | -16.69 |
Covariance contribution | 0.68 |
Combinations/Pair | 1.10 |
Mean z-score | -1.81 |
Structure conservation index | 0.71 |
SVM decision value | 0.15 |
SVM RNA-class probability | 0.608509 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9814342 95 - 22224390 AAAAAGACAGACAAAAAUAUGGUCCAUGUGGGCUGCUUCAAGCGAUUUUCUGUCGGGCAGUCUUAAAA------------AACCUUUCAAGAGGGAGAAUGGCAGAA .....((((((.........(((((....)))))((.....)).....))))))..((..((((....------------..((((....))))))))...)).... ( -22.80) >DroSec_CAF1 9656 95 - 1 AAAAAGACAGACAAAAAUAUGAUCCAUGUGGGCUGCUCCAAGCGAUUUUCUGUCGGGCAAUCUCAAAA------------AAACUUUCAAGAGGGAGAAUGGCAGAA .....((((((............((....))(((......))).....)))))).(.((.((((....------------...(((....))).)))).)).).... ( -19.20) >DroSim_CAF1 5447 95 - 1 AAAAAGACAGACAAAAAUAUGGUCCAUGUGGGCUGCUCCAAGCGAUUUUCUGUCGGGCAAUCUCAAAA------------AAACUUUCAAGAGGGAGAAUGGCAGAA .....((((((.........(((((....)))))((.....)).....)))))).(.((.((((....------------...(((....))).)))).)).).... ( -22.30) >DroEre_CAF1 5575 94 - 1 AAAAUGACAGAAAAAAAUGUGCUCCAUGUGGGCAGCUCGAAGCGAUUUUCUGUCGGGCAGUCUCAAA-------------AAACGUUCAAGAGGGAGAAUGGCAGAA ....((((((((((.....(((.((....)))))((.....))..)))))))))).((..((((...-------------..............))))...)).... ( -23.83) >DroYak_CAF1 7392 106 - 1 AAAAAGACGCAAAAAAAUAUGGUCCAUGUGGGCUGCUC-AAGCGAUUUGCUGUCGGCCAGUCUCAAAAAAAAAAAAUAAAAAACAUUCAAGAGGGAGAAUGGCAGAA .....((((((((.......(((((....)))))((..-..))..))))).))).((((.((((..............................)))).)))).... ( -25.01) >consensus AAAAAGACAGACAAAAAUAUGGUCCAUGUGGGCUGCUCCAAGCGAUUUUCUGUCGGGCAGUCUCAAAA____________AAACUUUCAAGAGGGAGAAUGGCAGAA .....((((((.........(((((....)))))((.....)).....)))))).(.((.((((..............................)))).)).).... (-16.01 = -16.69 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:13 2006