Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,809,914 – 9,810,009 |
Length | 95 |
Max. P | 0.594835 |
Location | 9,809,914 – 9,810,009 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 86.58 |
Mean single sequence MFE | -34.17 |
Consensus MFE | -30.69 |
Energy contribution | -30.67 |
Covariance contribution | -0.03 |
Combinations/Pair | 1.09 |
Mean z-score | -1.37 |
Structure conservation index | 0.90 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.594835 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9809914 95 + 22224390 GUGUUUUCCUGGCAAGUUACUCGUGGCAUUUGUGGUGGUGCUGAGGCAAGCCAAAGCCGUGACGAGCGCCUCCAGCGCCAUCGCGAU-UUA------AUUAU .((((.....)))).((((....))))..((((((((((((((((((..((....)).((.....)))))).)))))))))))))).-...------..... ( -33.60) >DroPse_CAF1 1163 85 + 1 GUCUUC-UCU--------------GGCA-UCGUGGUGGUGCUGAGGCAGGCCAAAGCGGUGACGAGCGCCUCCAGCGCCAUGCUGAU-ACUAUGGCGAUUCC (((...-..(--------------((.(-(((..(((((((((((((..((.....((....)).)))))).)))))))))..))))-.))).)))...... ( -31.80) >DroSec_CAF1 5210 95 + 1 GUGUUUUCCUGGCAAGUUACUCGUGGCAUUUGUGGUGGUGCUGAGGCAAGCCAAAGCCGUGACGAGCGCCUCCAGCGCCAUCGCGAU-UUA------AUUAU .((((.....)))).((((....))))..((((((((((((((((((..((....)).((.....)))))).)))))))))))))).-...------..... ( -33.60) >DroSim_CAF1 1173 95 + 1 GUGUUUUCCUGGCAAGUUACUCGUGGCAUUUGUGGUGGUGCUGAGGCAAGCCAAAGCCGUGACGAGCGCCUCCAGCGCCAUCGCGAU-UUA------AUUAU .((((.....)))).((((....))))..((((((((((((((((((..((....)).((.....)))))).)))))))))))))).-...------..... ( -33.60) >DroEre_CAF1 1177 95 + 1 GUGUUUUCCUGGCAAGUUACUCGUGGCAUUCGUGGUGGUGCUGAGGCAAGCCAAAGCCGUGACGAGCGCCUCCAGCGCCAUCGCGAU-UUA------AUUGU ...........((((((((....))))..((((((((((((((((((..((....)).((.....)))))).)))))))))))))).-...------.)))) ( -36.30) >DroYak_CAF1 2769 96 + 1 GUGUUUUCCUGGCAAGUUGCUCGUGGCAUUUGUGGUGGUGCUGAGGCAAGCCAAAGCCGUGACGAGCGCCUCCAGCGCCAUCGCGAUGUUA------AUUAU ..........(((.....)))..(((((((.((((((((((((((((..((....)).((.....)))))).)))))))))))))))))))------..... ( -36.10) >consensus GUGUUUUCCUGGCAAGUUACUCGUGGCAUUUGUGGUGGUGCUGAGGCAAGCCAAAGCCGUGACGAGCGCCUCCAGCGCCAUCGCGAU_UUA______AUUAU .............................((((((((((((((((((..((....)).((.....)))))).))))))))))))))................ (-30.69 = -30.67 + -0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:12 2006