Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,800,127 – 9,800,247 |
Length | 120 |
Max. P | 0.952174 |
Location | 9,800,127 – 9,800,247 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 94.89 |
Mean single sequence MFE | -46.89 |
Consensus MFE | -41.49 |
Energy contribution | -41.82 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -3.09 |
Structure conservation index | 0.88 |
SVM decision value | 1.42 |
SVM RNA-class probability | 0.952174 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9800127 120 - 22224390 UCCGUCCGGACAUUCGGACACCAGGACACCAGGACACCCGGGCGGGCACUCCCUGUCGUCAGCUGCCAGGCGAACUUAAUGCCUGCUCCGUCUGUCUAAGCUGUCCAGCUUCAGUCCAAC ...((((((....))))))....((((....(((((..((((((((((.......(((((........)))))......))))))).)))..)))))(((((....)))))..))))... ( -50.22) >DroSec_CAF1 14805 112 - 1 UCCGUCCGGACAUUCGGACACCA--------GGACACCCGGGCGGGCACUCCCUGUCGUCAGCUGCCAGGCGAACUUAAUGCCUGCUCGGUCUGUCUAAGCUGUCCAGCUUCAGUCCAAC ...((((((....))))))....--------((((..(((((((((((.......(((((........)))))......))))))))))).......(((((....)))))..))))... ( -46.52) >DroSim_CAF1 15933 112 - 1 UCCGUCCGGACAUUCGGACACCA--------GGACACCCGGGCGGGCACUCCCUGUCGUCAGCUGCCAGGCGAACUUAAUGCCUGCUCCGUCUGUCUAAGCUGUCCAGCUUCAGUCCAAC (((....))).....((((....--------(((((..((((((((((.......(((((........)))))......))))))).)))..)))))(((((....)))))..))))... ( -43.92) >consensus UCCGUCCGGACAUUCGGACACCA________GGACACCCGGGCGGGCACUCCCUGUCGUCAGCUGCCAGGCGAACUUAAUGCCUGCUCCGUCUGUCUAAGCUGUCCAGCUUCAGUCCAAC (((....))).....((((............(((((..((((((((((.......(((((........)))))......))))))).)))..)))))(((((....)))))..))))... (-41.49 = -41.82 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:11 2006