| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 9,799,248 – 9,799,361 |
| Length | 113 |
| Max. P | 0.867182 |
| Location | 9,799,248 – 9,799,361 |
|---|---|
| Length | 113 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 94.17 |
| Mean single sequence MFE | -30.17 |
| Consensus MFE | -27.40 |
| Energy contribution | -27.40 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.23 |
| Structure conservation index | 0.91 |
| SVM decision value | 0.85 |
| SVM RNA-class probability | 0.867182 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9799248 113 + 22224390 AACAUGCUCGGUGACAGCAUUGAAAAGCAUCUUUAAGAUGCAACGGAGGACUUUCUGCUGACCACUUGGCAAACUGUCACUCGGGUCUACCCCUUUACCAU-------UUUCCCAAGCAC ...(((((.(....)))))).((((((((((.....)))))....((((((....(((..(....)..)))....))).)))(((....)))........)-------))))........ ( -30.80) >DroSec_CAF1 13925 120 + 1 AACAUGCUCGGUGACAGCAUUGAAAAGCAUCUUUAAGAUGCAACGGAGGACUUUCUGCUGACCACUUCGCAAACUGUCACUCGGGUCUACCCCUUUCCCAUUUUCUAUUUUCCCAAACAC .....((((((((((((..(((....(((((.....)))))..(((((.....((....))...)))))))).))))))).))))).................................. ( -28.80) >DroSim_CAF1 15051 120 + 1 AACAUGCUCGGUGACAGCAUUGAAAAGCAUCUUUAAGAUGCAACGGAGGACUUUCUGCUGACCACUUGGCAAACUGUCACUCGGGUCUACCCCUUUCCCAUUUCCUAUUUUCCCAAACAC ...(((((.(....)))))).((((((((((.....)))))...(((((((....(((..(....)..)))....)))....(((....))).........))))..)))))........ ( -30.90) >consensus AACAUGCUCGGUGACAGCAUUGAAAAGCAUCUUUAAGAUGCAACGGAGGACUUUCUGCUGACCACUUGGCAAACUGUCACUCGGGUCUACCCCUUUCCCAUUU_CUAUUUUCCCAAACAC .....((((((((((((..(((..(((((((.....)))))..(((.((.....)).))).....))..))).))))))).))))).................................. (-27.40 = -27.40 + 0.00)
| Location | 9,799,248 – 9,799,361 |
|---|---|
| Length | 113 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 94.17 |
| Mean single sequence MFE | -37.17 |
| Consensus MFE | -34.65 |
| Energy contribution | -34.77 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.93 |
| SVM decision value | 0.46 |
| SVM RNA-class probability | 0.745907 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9799248 113 - 22224390 GUGCUUGGGAAA-------AUGGUAAAGGGGUAGACCCGAGUGACAGUUUGCCAAGUGGUCAGCAGAAAGUCCUCCGUUGCAUCUUAAAGAUGCUUUUCAAUGCUGUCACCGAGCAUGUU ((((((((....-------((((((..(((.....)))(((.(((..(((((..........)))))..))))))....(((((.....))))).......))))))..))))))))... ( -37.30) >DroSec_CAF1 13925 120 - 1 GUGUUUGGGAAAAUAGAAAAUGGGAAAGGGGUAGACCCGAGUGACAGUUUGCGAAGUGGUCAGCAGAAAGUCCUCCGUUGCAUCUUAAAGAUGCUUUUCAAUGCUGUCACCGAGCAUGUU ((((((((....((((....((..((.(((.....)))(((.(((..(((((..........)))))..))))))....(((((.....)))))))..))...))))..))))))))... ( -37.90) >DroSim_CAF1 15051 120 - 1 GUGUUUGGGAAAAUAGGAAAUGGGAAAGGGGUAGACCCGAGUGACAGUUUGCCAAGUGGUCAGCAGAAAGUCCUCCGUUGCAUCUUAAAGAUGCUUUUCAAUGCUGUCACCGAGCAUGUU ((((((((((.....((...((..((.(((.....)))(((.(((..(((((..........)))))..))))))....(((((.....)))))))..))...)).)).))))))))... ( -36.30) >consensus GUGUUUGGGAAAAUAG_AAAUGGGAAAGGGGUAGACCCGAGUGACAGUUUGCCAAGUGGUCAGCAGAAAGUCCUCCGUUGCAUCUUAAAGAUGCUUUUCAAUGCUGUCACCGAGCAUGUU ((((((((((........((((.....(((.....)))(((.(((..(((((..........)))))..))))))))))(((((.....)))))............)).))))))))... (-34.65 = -34.77 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:09 2006