Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,798,880 – 9,798,992 |
Length | 112 |
Max. P | 0.984710 |
Location | 9,798,880 – 9,798,992 |
---|---|
Length | 112 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 93.89 |
Mean single sequence MFE | -27.13 |
Consensus MFE | -23.59 |
Energy contribution | -25.37 |
Covariance contribution | 1.78 |
Combinations/Pair | 1.03 |
Mean z-score | -3.00 |
Structure conservation index | 0.87 |
SVM decision value | 1.28 |
SVM RNA-class probability | 0.939601 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9798880 112 + 22224390 CCUCUUUGGAUAUCAUAAAAGUAAACAAGCACCAAACUAAAUGUGUUCAACAUGCAAUGCUACAAUGUUUAUCUUUCGAUAAUGCACUGGAACACAGCAUGU--------UCAGAUGACC ..((((((((((((......((......))...........(((((((....((((..((......))(((((....)))))))))...)))))))).))))--------))))).)).. ( -21.00) >DroSec_CAF1 13552 120 + 1 CCUCUUUGAAUAUCAUAAAAGUAAAAAAGCACCAAACUAAAUGUGUUCAACAUGCAAUGCUACAAUGUUUAUCUUUCGAUAAUGCACUGGAGCACAGCAUGUUGCCUUAUUCAGAUGACC ..((((((((((...............(((((..........)))))((((((((..((((.((.((((((((....))))).))).)).))))..))))))))...)))))))).)).. ( -30.20) >DroSim_CAF1 14678 120 + 1 CCUCUUUGAAUAUCAUAAAAGUAAAAAAGCACCAAACUAAAUGUGUUCAACAUGCAAUGCUACAAUGUUUAUCUUUCGAUAAUGCACUGGAGCACAGCAUGUUGCCUUAUUCAGAUGACC ..((((((((((...............(((((..........)))))((((((((..((((.((.((((((((....))))).))).)).))))..))))))))...)))))))).)).. ( -30.20) >consensus CCUCUUUGAAUAUCAUAAAAGUAAAAAAGCACCAAACUAAAUGUGUUCAACAUGCAAUGCUACAAUGUUUAUCUUUCGAUAAUGCACUGGAGCACAGCAUGUUGCCUUAUUCAGAUGACC ..((((((((((...............(((((..........)))))((((((((..((((.((.((((((((....))))).))).)).))))..))))))))...)))))))).)).. (-23.59 = -25.37 + 1.78)
Location | 9,798,880 – 9,798,992 |
---|---|
Length | 112 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 93.89 |
Mean single sequence MFE | -35.80 |
Consensus MFE | -32.99 |
Energy contribution | -34.10 |
Covariance contribution | 1.11 |
Combinations/Pair | 1.03 |
Mean z-score | -3.59 |
Structure conservation index | 0.92 |
SVM decision value | 1.98 |
SVM RNA-class probability | 0.984710 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9798880 112 - 22224390 GGUCAUCUGA--------ACAUGCUGUGUUCCAGUGCAUUAUCGAAAGAUAAACAUUGUAGCAUUGCAUGUUGAACACAUUUAGUUUGGUGCUUGUUUACUUUUAUGAUAUCCAAAGAGG ((..(((..(--------((((((.(((((.(((((..(((((....))))).))))).))))).)))))))(((((((((......))))..)))))........)))..))....... ( -32.40) >DroSec_CAF1 13552 120 - 1 GGUCAUCUGAAUAAGGCAACAUGCUGUGCUCCAGUGCAUUAUCGAAAGAUAAACAUUGUAGCAUUGCAUGUUGAACACAUUUAGUUUGGUGCUUUUUUACUUUUAUGAUAUUCAAAGAGG ..(((.((((((....((((((((.(((((.(((((..(((((....))))).))))).))))).)))))))).....))))))..)))..........(((((.((.....))))))). ( -37.50) >DroSim_CAF1 14678 120 - 1 GGUCAUCUGAAUAAGGCAACAUGCUGUGCUCCAGUGCAUUAUCGAAAGAUAAACAUUGUAGCAUUGCAUGUUGAACACAUUUAGUUUGGUGCUUUUUUACUUUUAUGAUAUUCAAAGAGG ..(((.((((((....((((((((.(((((.(((((..(((((....))))).))))).))))).)))))))).....))))))..)))..........(((((.((.....))))))). ( -37.50) >consensus GGUCAUCUGAAUAAGGCAACAUGCUGUGCUCCAGUGCAUUAUCGAAAGAUAAACAUUGUAGCAUUGCAUGUUGAACACAUUUAGUUUGGUGCUUUUUUACUUUUAUGAUAUUCAAAGAGG ..(((.((((((....((((((((.(((((.(((((..(((((....))))).))))).))))).)))))))).....))))))..)))..........(((((.((.....))))))). (-32.99 = -34.10 + 1.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:08 2006