Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,797,495 – 9,797,613 |
Length | 118 |
Max. P | 0.677074 |
Location | 9,797,495 – 9,797,613 |
---|---|
Length | 118 |
Sequences | 3 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 94.81 |
Mean single sequence MFE | -31.90 |
Consensus MFE | -29.97 |
Energy contribution | -30.63 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.00 |
Mean z-score | -1.71 |
Structure conservation index | 0.94 |
SVM decision value | 0.30 |
SVM RNA-class probability | 0.677074 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9797495 118 - 22224390 AAAAAAACAGCGAGAGCAGAGGUAGUACGAACUGCAAACAGCUUAUUUUGCAUUUGAGUAAUGUGCGUUAAAUUAUUUGAGUGUGUAGGCCACAACAUCUCGGCGGAAGUGUGCUUGU .........(((((.((.((((((((....))))).....((((((...(((((..((((((.........))))))..)))))))))))........))).((....)))).))))) ( -31.30) >DroSec_CAF1 12185 111 - 1 ----AAACAGCGAGAGCAGAGGUAGUACGAACUGCAAACAGCUUAUUUUGCAUUUGAGUAAUGUGCGUUAAAUUAUUUGAGUGUGUAGGCCAC---AUCUCCGCGGAAGUGUGUUUGU ----(((((((....)).((((((((....))))).....((((((...(((((..((((((.........))))))..)))))))))))...---..)))(((....)))))))).. ( -32.20) >DroSim_CAF1 13318 111 - 1 ----AAACAGCGAGAGCAGAGGUAGUACGAACUGCAAACAGCUUAUUUUGCAUUUGAGUAAUGUGCGUUAAAUUAUUUGAGUGUGUAGGCCAC---AUCUCCGCGGAAGUGUGUUUGU ----(((((((....)).((((((((....))))).....((((((...(((((..((((((.........))))))..)))))))))))...---..)))(((....)))))))).. ( -32.20) >consensus ____AAACAGCGAGAGCAGAGGUAGUACGAACUGCAAACAGCUUAUUUUGCAUUUGAGUAAUGUGCGUUAAAUUAUUUGAGUGUGUAGGCCAC___AUCUCCGCGGAAGUGUGUUUGU ....(((((((....)).((((((((....))))).....((((((...(((((..((((((.........))))))..)))))))))))........)))(((....)))))))).. (-29.97 = -30.63 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:06 2006