Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,796,440 – 9,796,534 |
Length | 94 |
Max. P | 0.638136 |
Location | 9,796,440 – 9,796,534 |
---|---|
Length | 94 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 83.06 |
Mean single sequence MFE | -39.10 |
Consensus MFE | -28.56 |
Energy contribution | -28.90 |
Covariance contribution | 0.34 |
Combinations/Pair | 1.06 |
Mean z-score | -1.61 |
Structure conservation index | 0.73 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.520159 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9796440 94 + 22224390 GGCACAGAAGGGUCCCACGGU-------------------------GUGGGCCACUCAUUAUGCGCUGCCGCUUUAUGGCGCCCAAAUCUGUGCUACGAAAAUUGUAUUAAAAUUUU-UU ((((((((.((((.(((..(.-------------------------((((((((.......)).))..)))).)..))).))))...))))))))..(((((((.......))))))-). ( -30.80) >DroSec_CAF1 11114 120 + 1 GACACAGAAGGGUCCCUCGGUGGCGGGAAGGGCGGCUCGAAGGCGUGGGGGCCACUCAUUAUGCGCUGCCGCUUUAUGGCGCCCAAAUCUGUGCUACGAAAAUUGUAUUAAAAUUUUAUU ..((((((.((((.((.(((..(((.((.(((.(((((..........))))).))).))...)))..)))......)).))))...)))))).....((((((.......))))))... ( -39.70) >DroSim_CAF1 12247 120 + 1 GGCACAGAAGGGUCCCUCGGUGGCGGGAAGGGCGGCUCGAGGGCGUGGGGGCCACUCAUUAUGCGCUGCCGCUUUAUGGUGCCCAAAUCUGUGCUACGAAAAUUGUAUUAAAAUUUUAUU ((((((((.(((..((.....(((((..((.(((....((((((......))).)))....))).)).)))))....))..)))...))))))))...((((((.......))))))... ( -46.80) >consensus GGCACAGAAGGGUCCCUCGGUGGCGGGAAGGGCGGCUCGA_GGCGUGGGGGCCACUCAUUAUGCGCUGCCGCUUUAUGGCGCCCAAAUCUGUGCUACGAAAAUUGUAUUAAAAUUUUAUU ((((((((..((.((((((....((((........))))......))))))))........((.((.((((.....)))))).))..))))))))...((((((.......))))))... (-28.56 = -28.90 + 0.34)
Location | 9,796,440 – 9,796,534 |
---|---|
Length | 94 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 83.06 |
Mean single sequence MFE | -33.70 |
Consensus MFE | -24.72 |
Energy contribution | -25.50 |
Covariance contribution | 0.78 |
Combinations/Pair | 1.05 |
Mean z-score | -1.79 |
Structure conservation index | 0.73 |
SVM decision value | 0.22 |
SVM RNA-class probability | 0.638136 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9796440 94 - 22224390 AA-AAAAUUUUAAUACAAUUUUCGUAGCACAGAUUUGGGCGCCAUAAAGCGGCAGCGCAUAAUGAGUGGCCCAC-------------------------ACCGUGGGACCCUUCUGUGCC ..-.......................(((((((...(((((((((...(((....)))...))).))).(((((-------------------------...))))).))).))))))). ( -29.70) >DroSec_CAF1 11114 120 - 1 AAUAAAAUUUUAAUACAAUUUUCGUAGCACAGAUUUGGGCGCCAUAAAGCGGCAGCGCAUAAUGAGUGGCCCCCACGCCUUCGAGCCGCCCUUCCCGCCACCGAGGGACCCUUCUGUGUC ..........................(((((((...(((((.(.....(((....)))....((((.(((......))))))).).))))).((((........))))....))))))). ( -34.30) >DroSim_CAF1 12247 120 - 1 AAUAAAAUUUUAAUACAAUUUUCGUAGCACAGAUUUGGGCACCAUAAAGCGGCAGCGCAUAAUGAGUGGCCCCCACGCCCUCGAGCCGCCCUUCCCGCCACCGAGGGACCCUUCUGUGCC ..........................(((((((...((((........(((....)))....((((.(((......)))))))....)))).((((........))))....))))))). ( -37.10) >consensus AAUAAAAUUUUAAUACAAUUUUCGUAGCACAGAUUUGGGCGCCAUAAAGCGGCAGCGCAUAAUGAGUGGCCCCCACGCC_UCGAGCCGCCCUUCCCGCCACCGAGGGACCCUUCUGUGCC ..........................(((((((...(((..((.....(((....)))....((.(((((..........................))))))).))..))).))))))). (-24.72 = -25.50 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:02 2006