Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,793,862 – 9,793,961 |
Length | 99 |
Max. P | 0.627332 |
Location | 9,793,862 – 9,793,961 |
---|---|
Length | 99 |
Sequences | 3 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 91.92 |
Mean single sequence MFE | -27.17 |
Consensus MFE | -23.99 |
Energy contribution | -24.00 |
Covariance contribution | 0.01 |
Combinations/Pair | 1.10 |
Mean z-score | -1.83 |
Structure conservation index | 0.88 |
SVM decision value | 0.19 |
SVM RNA-class probability | 0.627332 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9793862 99 - 22224390 CAAGCAUAUUGCCAUAUUAUGUUCCAUGUUGCCAUCAAAAUGAACGGUAUAUGCAUUUAUGCUAAGAGUAGAAAUAUGCCGCCGUUUCUGGUGGCUGAA ..((((((.(((.((((..(((((.((.(((....))).)))))))..)))))))..))))))....(((....)))(((((((....))))))).... ( -27.00) >DroSec_CAF1 8582 99 - 1 GAAGCAUAUUCCCAUAUUAUGCUCCAAGUUUCCAUCAAAAUGAACGGUGCAUGCAUUUGUGCAAAGAGUAGAAAUAUGCCGCCGUUUCUGGUGGGUGAA (.((((((.........)))))).).....(((((((....(((((((((((..((((.(((.....))).))))))).)))))))).))))))).... ( -28.50) >DroSim_CAF1 9716 99 - 1 GUCGCAUAUUCCCAUAUUAUGCUCCAAGUUUCCAUCAAAAUGAACGGUGCAUGCAUUUGUGCAAAGAGUAGAAAUAUGCCGCCGUUUCUGGUGGCUGAA ...(((((.........))))).........((((((....(((((((((((..((((.(((.....))).))))))).)))))))).))))))..... ( -26.00) >consensus GAAGCAUAUUCCCAUAUUAUGCUCCAAGUUUCCAUCAAAAUGAACGGUGCAUGCAUUUGUGCAAAGAGUAGAAAUAUGCCGCCGUUUCUGGUGGCUGAA ...(((((.........)))))........(((((((....(((((((((((..((((.(((.....))).))))))).)))))))).))))))).... (-23.99 = -24.00 + 0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:49 2006