Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,793,601 – 9,793,703 |
Length | 102 |
Max. P | 0.979115 |
Location | 9,793,601 – 9,793,703 |
---|---|
Length | 102 |
Sequences | 3 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 90.60 |
Mean single sequence MFE | -20.04 |
Consensus MFE | -18.86 |
Energy contribution | -18.86 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.70 |
Structure conservation index | 0.94 |
SVM decision value | 0.59 |
SVM RNA-class probability | 0.792978 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9793601 102 + 22224390 CGCCUGAAUUUCUUUUUUCAGCUUUCUGCUGCACUUUUUUUUUUUUUUUGCAAAAUUCCUCAUAAUGCGCUGCCAACAGCGGCCUGUCAGCGUAUGAAUGUG .((..(((..........((((.....)))).............)))..)).........(((.((((((((...((((....))))))))))))..))).. ( -19.30) >DroSec_CAF1 8333 94 + 1 CGCCUGAAUUUCUUUUUUCAGCUUUUUGCUGCAUUUUU---UUUUUUUUGCAAAAUUCCUCAUAAUGCGCUGCCAACAGCGGCCUGUCAGCGUAUGA----- .((.((((........)))))).((((((.........---........)))))).........((((((((...((((....))))))))))))..----- ( -20.43) >DroSim_CAF1 9476 91 + 1 CGCCUGAAUUUUUUUUUUCAGCUUUCUGCUGCAUUUUU------UUUUUGCAAAAUUCCUCAUAAUGCGCUGCCAACAGCGGCCUGUCAGCGUAUGA----- .....(((((((.......(((.....)))(((.....------....))))))))))......((((((((...((((....))))))))))))..----- ( -20.40) >consensus CGCCUGAAUUUCUUUUUUCAGCUUUCUGCUGCAUUUUU___UUUUUUUUGCAAAAUUCCUCAUAAUGCGCUGCCAACAGCGGCCUGUCAGCGUAUGA_____ .((.((((........)))))).......((((...............))))............((((((((...((((....))))))))))))....... (-18.86 = -18.86 + -0.00)
Location | 9,793,601 – 9,793,703 |
---|---|
Length | 102 |
Sequences | 3 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 90.60 |
Mean single sequence MFE | -21.90 |
Consensus MFE | -21.90 |
Energy contribution | -21.90 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.06 |
Structure conservation index | 1.00 |
SVM decision value | 1.83 |
SVM RNA-class probability | 0.979115 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9793601 102 - 22224390 CACAUUCAUACGCUGACAGGCCGCUGUUGGCAGCGCAUUAUGAGGAAUUUUGCAAAAAAAAAAAAAAAGUGCAGCAGAAAGCUGAAAAAAGAAAUUCAGGCG ...........((..((((....))))..)).(((((..((.....))..)))..................((((.....))))...............)). ( -21.90) >DroSec_CAF1 8333 94 - 1 -----UCAUACGCUGACAGGCCGCUGUUGGCAGCGCAUUAUGAGGAAUUUUGCAAAAAAAA---AAAAAUGCAGCAAAAAGCUGAAAAAAGAAAUUCAGGCG -----......((..((((....))))..)).(((((..((.....))..)))........---.......((((.....))))...............)). ( -21.90) >DroSim_CAF1 9476 91 - 1 -----UCAUACGCUGACAGGCCGCUGUUGGCAGCGCAUUAUGAGGAAUUUUGCAAAAA------AAAAAUGCAGCAGAAAGCUGAAAAAAAAAAUUCAGGCG -----......((..((((....))))..)).(((((..((.....))..))).....------.......((((.....))))...............)). ( -21.90) >consensus _____UCAUACGCUGACAGGCCGCUGUUGGCAGCGCAUUAUGAGGAAUUUUGCAAAAAAAA___AAAAAUGCAGCAGAAAGCUGAAAAAAGAAAUUCAGGCG ...........((..((((....))))..)).(((((..((.....))..)))..................((((.....))))...............)). (-21.90 = -21.90 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:48 2006