Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,790,755 – 9,790,857 |
Length | 102 |
Max. P | 0.851549 |
Location | 9,790,755 – 9,790,857 |
---|---|
Length | 102 |
Sequences | 3 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 96.73 |
Mean single sequence MFE | -32.10 |
Consensus MFE | -30.85 |
Energy contribution | -30.97 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.04 |
Mean z-score | -1.96 |
Structure conservation index | 0.96 |
SVM decision value | 0.79 |
SVM RNA-class probability | 0.851549 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9790755 102 + 22224390 CCUUCUGGCGAAUGGCGAAAGGCGAAAGGACUAGGGACAGGCAGCAAAAUAUGGCAUCCCAGGUCCUGGCAAACGCCAAACGCUUAAAUAAACUGACUGUAA ......((((..(((((....((...((((((.((((..(.((........)).).)))).)))))).))...)))))..)))).................. ( -33.10) >DroSec_CAF1 5495 102 + 1 CCUUCUGCCGAAUGGCGAAUGGCGAAAGGACUAGGGACAGGCAGCAAGAUAUGGCAUCCCGGGUCCUGGCAAACGCCAAACGCUUAAAUAAACUGACUGUAA ..(((.(((....)))))).((((..((((((.((((..(.((........)).).)))).))))))(((....)))...)))).................. ( -30.60) >DroSim_CAF1 6640 102 + 1 CCUUCUGGCGAAUGGCGAAUGGCGAAAGGACUAGGGACAGGCGGCAAGAUAUGGCAUCCCGGGUCCUGGCAAACGCCAAACGCUUAAAUAAACUGACUGUAA ......((((..(((((....((...((((((.((((...((.(.......).)).)))).)))))).))...)))))..)))).................. ( -32.60) >consensus CCUUCUGGCGAAUGGCGAAUGGCGAAAGGACUAGGGACAGGCAGCAAGAUAUGGCAUCCCGGGUCCUGGCAAACGCCAAACGCUUAAAUAAACUGACUGUAA ......((((..(((((....((...((((((.((((..(.((........)).).)))).)))))).))...)))))..)))).................. (-30.85 = -30.97 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:37 2006