Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,778,211 – 9,778,316 |
Length | 105 |
Max. P | 0.716690 |
Location | 9,778,211 – 9,778,316 |
---|---|
Length | 105 |
Sequences | 3 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 64.63 |
Mean single sequence MFE | -24.13 |
Consensus MFE | -8.76 |
Energy contribution | -10.60 |
Covariance contribution | 1.84 |
Combinations/Pair | 1.25 |
Mean z-score | -2.78 |
Structure conservation index | 0.36 |
SVM decision value | 0.39 |
SVM RNA-class probability | 0.716690 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9778211 105 - 22224390 C-------ACAAUGCCGCAGUUCGGACAAUUAAUUGGUUUAUUUACGCAUUGUCUUGCUUUUUGCUAGAACAUUUAAAUGUGCAAUAGCACAACGAACUGUUCGGCAUUAAA .-------..((((((((((((((.....((((.((((......))......(((.((.....)).))).)).)))).(((((....))))).)))))))..)))))))... ( -31.30) >DroSec_CAF1 74659 79 - 1 -----------------------GCACAAUUAAAUGGUUUAUUUACGCAUUGUCUUGCUUUUUGCUAGAACAUUG-CACAUUUAAUAGCACAACAAACUGUUC--------- -----------------------((...((((((((((......))(((.(((((.((.....)).)).))).))-).)))))))).))..............--------- ( -16.50) >DroYak_CAF1 65248 106 - 1 CACAAUACACAAUGCUAAAGUUUGGACAAUUAAUUGGUUUAUUUACGCAAU-----GCUUUUUGCUGGAACAUUG-CCCACUUAAUAGUUCAACAAACUGUGUGGCAUUUAG ..........(((((((.(((((((((.(((((.(((.........(((((-----(.((((....)))))))))-)))).))))).)))))...))))...)))))))... ( -24.60) >consensus C_______ACAAUGC___AGUU_GGACAAUUAAUUGGUUUAUUUACGCAUUGUCUUGCUUUUUGCUAGAACAUUG_CACAUUUAAUAGCACAACAAACUGUUCGGCAUU_A_ ..........(((((((.((((((......................(((......))).....((((..................))))....))))))...)))))))... ( -8.76 = -10.60 + 1.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:28 2006