Locus 3645

Sequence ID	X_DroMel_CAF1
Location	9,772,576 – 9,772,673
Length	97
Max. P	0.996650

overview

Window 8

Location	9,772,576 – 9,772,673
Length	97
Sequences	6
Columns	104
Reading direction	forward
Mean pairwise identity	73.01
Mean single sequence MFE	-37.73
Consensus MFE	-15.42
Energy contribution	-15.04
Covariance contribution	-0.39
Combinations/Pair	1.36
Mean z-score	-2.66
Structure conservation index	0.41
SVM decision value	2.20
SVM RNA-class probability	0.990118
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9772576 97 + 22224390
-AAUGGAAACUGUUGCUACACGA------CUGCAGUUGAAGCCGUUGCUGUGUUCAGAAGGCAGUCGCUGGAGCAGGAGGGGAUUUUUGCUCCGUUUCCGUUAG
-(((((((((..........(((------((((..(((((..((....))..)))))...)))))))..((((((((((....))))))))))))))))))).. ( -39.80)
>DroPse_CAF1 75258 98 + 1
GGAUGGAAACUGUUGCUACACGACGACGACUGCAGUUGAAGUUGGGGCU-CGUUGGGGGGGCAUGCAG-CGUGU---AGAAGGCCA-AGGCAUGUUUCCGUUGG
.(((((((((.....((((((..((((.......))))..((((.((((-(.......)))).).)))-)))))---))...((..-..))..))))))))).. ( -33.90)
>DroSec_CAF1 69073 97 + 1
-AAUGGAAACUGUUGCUACACGA------CUGCCGUUGAAGCCGUUGCUGUGUUCAGGCGACAGUCGCGGGAGCAGGAGGAGAUUUCUGCUCCGUUUCCGUUAG
-(((((((((........(.(((------(((.((((..(((((....)).)))..)))).)))))).)((((((((((....))))))))))))))))))).. ( -42.10)
>DroEre_CAF1 67608 85 + 1
-AAUGGAAACUGUUGCUACGCGA------CUGCAGUUGAAGCCGUUGCUGUGUUCAGGAGGCAGU------------AGGGGACUUCUGCCCCGUUUCCGUUAG
-(((((((((((..((.((((((------(.((.......)).))))).)))).))((.(((((.------------((....)).)))))))))))))))).. ( -35.90)
>DroYak_CAF1 59536 97 + 1
-AAUGGGAACUGUUGCUACGCGA------CUGCAGUUGAAGCCGUUGCUGUGUUCAGGAGGCAGUCGCUGAAGCAGGAGGGGAUUUCUGCUCCGUUUCCGUUAG
-(((((((((...((((.(((((------((((..(((((..((....))..)))))...)))))))).).))))((((.((....)).))))))))))))).. ( -42.30)
>DroPer_CAF1 79879 98 + 1
GGAUGGAAACUGUUGCUACACGACGAUGACUGCAGUUGAAGUUGGGGCU-CGUUGGGGGGGCAUGCAG-CGUGU---AGAAGGCCA-AGGCAUGUUUCCGUUGG
.(((((((((...((((...((((((.(.((.(((......))).))))-)))))....(((.(((..-...))---)....))).-.)))).))))))))).. ( -32.40)
>consensus
_AAUGGAAACUGUUGCUACACGA______CUGCAGUUGAAGCCGUUGCUGUGUUCAGGAGGCAGUCGC_GGAGC___AGGAGACUUCUGCCCCGUUUCCGUUAG
.(((((((((((((.((..(((.......(.((.......)).)......)))...)).))))...............((((.......))))))))))))).. (-15.42 = -15.04 +  -0.39)

alignment

secondary structure

dotplot

Window 9

Location	9,772,576 – 9,772,673
Length	97
Sequences	6
Columns	104
Reading direction	reverse
Mean pairwise identity	73.01
Mean single sequence MFE	-29.98
Consensus MFE	-10.49
Energy contribution	-10.22
Covariance contribution	-0.27
Combinations/Pair	1.42
Mean z-score	-3.17
Structure conservation index	0.35
SVM decision value	2.73
SVM RNA-class probability	0.996650
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9772576 97 - 22224390
CUAACGGAAACGGAGCAAAAAUCCCCUCCUGCUCCAGCGACUGCCUUCUGAACACAGCAACGGCUUCAACUGCAG------UCGUGUAGCAACAGUUUCCAUU-
.....((((((((((((............)))))).((((((((....(((....(((....))))))...))))------)))).........))))))...- ( -33.50)
>DroPse_CAF1 75258 98 - 1
CCAACGGAAACAUGCCU-UGGCCUUCU---ACACG-CUGCAUGCCCCCCCAACG-AGCCCCAACUUCAACUGCAGUCGUCGUCGUGUAGCAACAGUUUCCAUCC
.....((((((..((..-..)).....---....(-(((((((........(((-(((..((........))..))..))))))))))))....)))))).... ( -22.90)
>DroSec_CAF1 69073 97 - 1
CUAACGGAAACGGAGCAGAAAUCUCCUCCUGCUCCCGCGACUGUCGCCUGAACACAGCAACGGCUUCAACGGCAG------UCGUGUAGCAACAGUUUCCAUU-
.....(((((((((((((..........)))))))(((((((((((..(((....(((....)))))).))))))------)))))........))))))...- ( -41.60)
>DroEre_CAF1 67608 85 - 1
CUAACGGAAACGGGGCAGAAGUCCCCU------------ACUGCCUCCUGAACACAGCAACGGCUUCAACUGCAG------UCGCGUAGCAACAGUUUCCAUU-
.....(((((((((((((.((....))------------.))))))).........((..(((((.(....).))------)))....))....))))))...- ( -26.90)
>DroYak_CAF1 59536 97 - 1
CUAACGGAAACGGAGCAGAAAUCCCCUCCUGCUUCAGCGACUGCCUCCUGAACACAGCAACGGCUUCAACUGCAG------UCGCGUAGCAACAGUUCCCAUU-
.....((.(((((((..(....)..))))((((...((((((((....(((....(((....))))))...))))------))))..))))...))).))...- ( -32.00)
>DroPer_CAF1 79879 98 - 1
CCAACGGAAACAUGCCU-UGGCCUUCU---ACACG-CUGCAUGCCCCCCCAACG-AGCCCCAACUUCAACUGCAGUCAUCGUCGUGUAGCAACAGUUUCCAUCC
.....((((((..((..-..)).....---....(-(((((((........(((-(......(((.(....).)))..))))))))))))....)))))).... ( -23.00)
>consensus
CUAACGGAAACGGAGCAGAAAUCCCCU___GCUCC_GCGACUGCCUCCUGAACACAGCAACGGCUUCAACUGCAG______UCGUGUAGCAACAGUUUCCAUU_
.....(((((((((.......))).................(((..(.(((.........(((......))).........))).)..)))...)))))).... (-10.49 = -10.22 +  -0.27)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:27 2006