Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,769,917 – 9,770,018 |
Length | 101 |
Max. P | 0.998773 |
Location | 9,769,917 – 9,770,018 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 92.60 |
Mean single sequence MFE | -24.40 |
Consensus MFE | -21.08 |
Energy contribution | -21.88 |
Covariance contribution | 0.80 |
Combinations/Pair | 1.00 |
Mean z-score | -2.49 |
Structure conservation index | 0.86 |
SVM decision value | 3.22 |
SVM RNA-class probability | 0.998773 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9769917 101 - 22224390 ACUUAAUUAAUUAAAAAAAAAAGAAGAGGAAUAGCACAAACAGCGACUUCAUCUGGAAUCAAUAGCUGGGUGAAGCUCAUAACUUGGCUUUUUGCCAAGGU .........................(((.....((.......))..(((((((..(.........)..))))))))))....((((((.....)))))).. ( -24.60) >DroSec_CAF1 66505 97 - 1 ACUUAAUUAAUUAAA----AAAGAAGAGGAGUAGCACAAACAGCGACUUCAUCUGGAAUCAAUAGCUGGGUGAAGCUCAUAACUUGGCUUUUUGCCAAGGU ...............----.........((((..(((...((((((.(((....))).))....)))).)))..))))....((((((.....)))))).. ( -25.50) >DroSim_CAF1 22095 97 - 1 ACUUAAUUAAUUAAA----AAAGAAGAGGAGUAGCACAAACAGCGACUUCAUCUGGAAUCAAUAGCUGGGUGAAGCUCAUAACUUGGCUUUUUGCCAAUGU ...............----.........((((..(((...((((((.(((....))).))....)))).)))..))))...(((((((.....))))).)) ( -21.90) >DroEre_CAF1 64991 97 - 1 ACUUAAUUAAUUAAA----AAGGAAUAGGAACAGCGCAAGCAGCGACUUCAUCUGUAGUCAAUAGCAGGGUGAAGCUCAUAACUUGGCUUUUAGCCAAGGU ...............----..............((....))...((((((((((((........))).))))))).))....((((((.....)))))).. ( -25.60) >DroYak_CAF1 56795 97 - 1 ACUUAAUUAAUUAAA----AAUGAAGAGAAAUAGCACAAACAGCAACUUCAUCUGGAAUCAAUAGCUGGGUGAAGCUCAUAACUUGGCUUUUUGCCAAGGU ...............----......(((.....((.......))..(((((((..(.........)..))))))))))....((((((.....)))))).. ( -24.40) >consensus ACUUAAUUAAUUAAA____AAAGAAGAGGAAUAGCACAAACAGCGACUUCAUCUGGAAUCAAUAGCUGGGUGAAGCUCAUAACUUGGCUUUUUGCCAAGGU .........................(((.....((.......))..((((((((((.........)))))))))))))....((((((.....)))))).. (-21.08 = -21.88 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:25 2006