Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,763,900 – 9,763,994 |
Length | 94 |
Max. P | 0.882699 |
Location | 9,763,900 – 9,763,994 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 78.04 |
Mean single sequence MFE | -24.42 |
Consensus MFE | -6.28 |
Energy contribution | -7.82 |
Covariance contribution | 1.54 |
Combinations/Pair | 1.07 |
Mean z-score | -2.17 |
Structure conservation index | 0.26 |
SVM decision value | 0.92 |
SVM RNA-class probability | 0.882699 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9763900 94 - 22224390 -----CGGCCACCCCUUUAUGG-GGCCGGGGCCAAUCUUAUGGGCCUCGUCCAGGCGCCAAAAUGUGGCAAAUUAAAUGCCAAAACAUCAAAAGGCAAAC- -----..(((.((((.....))-)).(((((((.........)))))))....)))((((.....))))........((((............))))...- ( -34.50) >DroSec_CAF1 57353 95 - 1 -----CGACCACCCCUUUAUGGGGGCCGGGGCCAAUCUUAUG-GCCUCGUCCAGGCGCCAAAAUGUGACAUAUUAAAUGCCAAAACAUCAAAAGGCAAACA -----......((((.....))))((((((((((......))-))))).....((((....(((((...)))))...))))............)))..... ( -30.50) >DroEre_CAF1 59003 92 - 1 -----CGGCCACCCCUCAUUGG-G-CCGGGGCCAAUCUUAUG-GCCUCAACCAGGCGCCAAAAUGUGUCAAAUUAAAUGCUAAAACAUCAAAAGGCCAAC- -----.((((..(((.....))-)-..(((((((......))-))))).....(((((......)))))........................))))...- ( -30.40) >DroYak_CAF1 50769 93 - 1 -----CGGCCACCCCUUUUCGG-GACCGGGCUCAAUCUCAUG-UCCUCGUCCAGGCGCCAAAAUGUGACAAAUUAAAUGCCAAAACAUCAAAAGGCAAAC- -----..(((...........(-(((.((((..........)-)))..)))).((((....(((.......)))...))))............)))....- ( -19.60) >DroAna_CAF1 38984 80 - 1 GCCUUCGCCCCUUCCCUUAU-----------CCAAUUUG-------CCGUCCAGGCGCCAAAAUGUGACAAAUUAAAUGCCAAAACAUCAAAAGACCC--- ...................(-----------(((.((((-------.(((....))).)))).)).))..............................--- ( -7.10) >consensus _____CGGCCACCCCUUUAUGG_G_CCGGGGCCAAUCUUAUG_GCCUCGUCCAGGCGCCAAAAUGUGACAAAUUAAAUGCCAAAACAUCAAAAGGCAAAC_ .......(((.................(((((...........))))).....((((....(((.......)))...))))............)))..... ( -6.28 = -7.82 + 1.54)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:24 2006