Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,743,158 – 9,743,254 |
Length | 96 |
Max. P | 0.579366 |
Location | 9,743,158 – 9,743,254 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 74.55 |
Mean single sequence MFE | -29.09 |
Consensus MFE | -9.44 |
Energy contribution | -8.80 |
Covariance contribution | -0.63 |
Combinations/Pair | 1.43 |
Mean z-score | -2.20 |
Structure conservation index | 0.32 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.579366 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9743158 96 + 22224390 UAAUUGAUGGG-CGAGGGCC-------GAGUUGUUACUU-------UGCUUUUUUGCAUUUUGAUUAACAUUCAAUUGGCCAGUUGGUCAAUUGACA---UUUUUGGUUGGCCU ...........-...(((((-------(((((((((...-------(((......)))...))).))))..((((((((((....))))))))))..---.......))))))) ( -29.00) >DroPse_CAF1 43779 105 + 1 UAAUUGAUGGCCCGAGGGUC-------G--UUUCUGCUUUUGGCCAGGUUUUGUUGCGCUUUGAUUAGCAGUCAAUUGGCGCCUUCAUCAAUUGAAACUAUUUUUGGCCACCAU .....(((((((....))))-------)--))........((((((((....(((((((((((((.....)))))..)))))..(((.....))))))....)))))))).... ( -32.00) >DroSec_CAF1 35191 96 + 1 UAAUUGAUGGG-CGAGGGCC-------GAGUUGUUACUU-------CGCUUUUUUGCAUUUUGAUUAACAUUCAAUUGGUCAGUUGGUCAAUUUACA---UUUUUGGUUGGCCU .(((((((.((-(((((((.-------((((....))))-------.)))..)))))...((((.......)))).).)))))))((((((((....---.....)))))))). ( -24.00) >DroEre_CAF1 31463 95 + 1 UAAUUGAUGGG-CGAGGGCU-------GAGCUGUUACUU-------GCCU-UUUUGCAUUUUGAUUAACAUUCACGUGGUCAGUUGGUCAAUUGAAG---UUUUCGGUUGGCCU .((((((((((-(((((((.-------.....))).)))-------))))-.....(((..(((.......))).))))))))))((((((((((..---...)))))))))). ( -28.80) >DroYak_CAF1 29629 103 + 1 UAAUUGAUGGG-CGAGGGCCGAGGACCGAGUUGUUACUU-------GGCUUUUUUGCAUUUUGAUUAACAUUCGCUUGGUCAGUUGGUCAAUUGAAG---UUUUUGGGUUGGCU ((((((((.((-((((.((.(((((((((((....))))-------)).))))).)).............))))).).))))))))(((((((.((.---...)).))))))). ( -28.74) >DroPer_CAF1 44680 105 + 1 UAAUUGAUGGCCCGAGGGUC-------G--UUUCUGCUUUUGGCCAGGUUUUGUUGCGCUUUGAUUAGCAGUCAAUUGGCGCCUUCAUCAAUUGAAACUAUUUUUGGCCACCAU .....(((((((....))))-------)--))........((((((((....(((((((((((((.....)))))..)))))..(((.....))))))....)))))))).... ( -32.00) >consensus UAAUUGAUGGG_CGAGGGCC_______GAGUUGUUACUU_______GGCUUUUUUGCAUUUUGAUUAACAUUCAAUUGGCCAGUUGGUCAAUUGAAA___UUUUUGGUUGGCCU ................((((...........(((((.((........((......)).....)).))))).((((((((((....))))))))))..........))))..... ( -9.44 = -8.80 + -0.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:22 2006