Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,726,949 – 9,727,052 |
Length | 103 |
Max. P | 0.771947 |
Location | 9,726,949 – 9,727,052 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 76.50 |
Mean single sequence MFE | -14.56 |
Consensus MFE | -4.67 |
Energy contribution | -5.75 |
Covariance contribution | 1.08 |
Combinations/Pair | 1.14 |
Mean z-score | -1.94 |
Structure conservation index | 0.32 |
SVM decision value | 0.53 |
SVM RNA-class probability | 0.771947 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9726949 103 + 22224390 CUCUAUUACAUUCUGGAGAAUUCUCCGGCUCUCCGCUACCUCCCGCCUUUUACAUUUCCCAAGUCUCAUUUUUUCUAGGCCUCUCUCUUCGCUCGCCGAAAAU ..........(((.((((....))))(((....((.........((((............................)))).........))...))))))... ( -14.06) >DroPse_CAF1 28904 89 + 1 CUCUUUCACAUUCUGGAGAAUUCUCC-CUUCUCCAUUUCCAUUUGCACUUAACAUUUGCC--------UUCUUUC---GCUCCUCAGUU--CUGGUUGGAAAU .............(((((((......-.)))))))((((((...(((.........))).--------.......---...((......--..)).)))))). ( -14.00) >DroSec_CAF1 19368 103 + 1 CUCUUAUACAUUGUUAAGAAUUCUUUGUCUCUCCGGUCCCUUCCGCCUUUUCCAUUUCCCCAGUCUCAUUUUUCCUAGGCCUCUCUCUUCGCUCGACGAAAAU .(((((........)))))....((((((.....((......))((((............................))))..............))))))... ( -12.59) >DroEre_CAF1 16169 102 + 1 CUCUAUUACAUUCUGGAGAAUUCUCAGUCUAUCCGGUCCCUCUCGCCUUUC-CAUUUCCCCAGUCUCAUUUUCUCCAGGCCUCUCUUUUCGCUCGCCGAAAAU ...........(((((((((.....((.((....((...............-.....))..)).))....)))))))))......((((((.....)))))). ( -14.95) >DroYak_CAF1 13303 103 + 1 CUCUAUUACAUUCUGGAGAAUUCUCUGGCUCUCCGGUCCCGCUCGCCUUUCCCAUUUCCCCAGUCUCAGUUUCUCUAGGCCUCUCUUUUCGCUCGCCGAAAAU ...........(((((((((....((((..((..((.....................))..))..)))).)))))))))......((((((.....)))))). ( -17.20) >consensus CUCUAUUACAUUCUGGAGAAUUCUCCGGCUCUCCGGUCCCUCUCGCCUUUCACAUUUCCCCAGUCUCAUUUUUUCUAGGCCUCUCUCUUCGCUCGCCGAAAAU .............((((((..........)))))).........((((............................)))).......((((.....))))... ( -4.67 = -5.75 + 1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:20 2006