Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,718,822 – 9,718,923 |
Length | 101 |
Max. P | 0.500000 |
Location | 9,718,822 – 9,718,923 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 93.86 |
Mean single sequence MFE | -18.31 |
Consensus MFE | -17.12 |
Energy contribution | -16.92 |
Covariance contribution | -0.20 |
Combinations/Pair | 1.15 |
Mean z-score | -1.04 |
Structure conservation index | 0.93 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9718822 101 + 22224390 AACAGACUUAAAAAUAAACACGCAUUUAAAUUUAACUUUGCUCAGUGGGAGAGUCCAGUUUUAGACACGCUAAGUGGGUAAACAAGUUGGAAUUAGCAAAA .....................((...(((.((((((((((((((.(.((.(.(((........))).).)).).))))))...)))))))).))))).... ( -16.60) >DroSec_CAF1 6837 101 + 1 AACAGACUUAAAAAUAAACACGCAUUUAAAUUUAACUUUGCCCAGUGGGGGAGUCCAAAUUUAGACACGCUAAGUGGGUAAACAAGUUGGAAUUAGCAAAA .....................((...(((.((((((((((((((.(.((.(.(((........))).).)).).))))))...)))))))).))))).... ( -21.20) >DroSim_CAF1 6029 100 + 1 AACAGACUUAAAAAUAAACACGCAUUUAAAUUUAACUUUGCCCAGUGGGGGAGUCCAAUUUUAGACACGCUAAGUG-GUAAACAAGUUGGAAUUAGCAAAA .....................((............((((.((....)).))))((((((((....(((.....)))-......))))))))....)).... ( -17.10) >DroEre_CAF1 6475 101 + 1 AACAGACUUCAAAAUAAGCACGCAUUUCAAUUUAACUUUGCUUAGUGGGGCAGUCCAAUUUUAGACACGCUAAGUGGGUAAACAAGUUAAAAUUAGCAAAA ....(.(((((...((((((..................)))))).)))))).(((........)))..(((((.(((.(.....).)))...))))).... ( -15.17) >DroYak_CAF1 5237 101 + 1 AACAGACUUAAAAAUAAACACGCAUUUAAAUUUAACUUUGCCCAGUGGGGGAGUCCAAUAUCAGACACGCUAAGUGGGUAAACAAGUUAAAAUUAGCAAAA .....................((...(((.((((((((((((((.(.((.(.(((........))).).)).).))))))...)))))))).))))).... ( -21.50) >consensus AACAGACUUAAAAAUAAACACGCAUUUAAAUUUAACUUUGCCCAGUGGGGGAGUCCAAUUUUAGACACGCUAAGUGGGUAAACAAGUUGGAAUUAGCAAAA .....................((...(((.((((((((((((((.(.((.(.(((........))).).)).).))))))...)))))))).))))).... (-17.12 = -16.92 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:19 2006