Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,717,014 – 9,717,105 |
Length | 91 |
Max. P | 0.640990 |
Location | 9,717,014 – 9,717,105 |
---|---|
Length | 91 |
Sequences | 4 |
Columns | 91 |
Reading direction | reverse |
Mean pairwise identity | 87.66 |
Mean single sequence MFE | -30.53 |
Consensus MFE | -22.98 |
Energy contribution | -23.85 |
Covariance contribution | 0.87 |
Combinations/Pair | 1.12 |
Mean z-score | -1.59 |
Structure conservation index | 0.75 |
SVM decision value | 0.22 |
SVM RNA-class probability | 0.640990 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9717014 91 - 22224390 GGCCCAGAUAAGAUUUUCCCCCUGGUACCCCUUUGCGCAGAACAGGGUGAUGUACUACCAGCCGGGGAAAUCUAUGGCCCCUCGUACCGAU ((((......((((((((((.((((((.....(..(.(......).)..).....))))))..))))))))))..))))............ ( -29.60) >DroSec_CAF1 5056 90 - 1 GGCCCAGAUAAGAUUUUCC-CCUGGUACCCCUUCGCGAAGAACAGGGUGAUGUACUACCAGCCGGGGAAAUUUAUGGGCCCCCGUACCGAA ((((((....(((((((((-((((((((((.(((.....)))..))))........)))))..)))))))))).))))))........... ( -33.70) >DroSim_CAF1 4214 90 - 1 GGCCCAGAUAAGAUUUUCC-CCUGGUACCCCUUCGCGAAGAACAGGGUGAUGUACUGCCAGCCGGGGAAAUCUAUGUGCCCUCGUACCGAA (((.((....(((((((((-((((((((((.(((.....)))..))))........)))))..)))))))))).)).)))........... ( -29.50) >DroYak_CAF1 3427 89 - 1 GGCCCAGAUAAGAUUUUCC-CCUGGUAGCCCA-UGCGAGAAACAGGGUGCUGUACUAGCAGUCGGGUAAAUCUAUGGGCGCUUCAACCGAA .(((((....((((((.((-(((.(((.....-))).)).....((.(((((...))))).))))).)))))).)))))............ ( -29.30) >consensus GGCCCAGAUAAGAUUUUCC_CCUGGUACCCCUUCGCGAAGAACAGGGUGAUGUACUACCAGCCGGGGAAAUCUAUGGGCCCUCGUACCGAA ((((((....(((((((((..((((((.....((((..........)))).....))))))...))))))))).))))))........... (-22.98 = -23.85 + 0.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:18 2006