Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,710,537 – 9,710,628 |
Length | 91 |
Max. P | 0.914723 |
Location | 9,710,537 – 9,710,628 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 90.79 |
Mean single sequence MFE | -30.92 |
Consensus MFE | -26.22 |
Energy contribution | -27.10 |
Covariance contribution | 0.88 |
Combinations/Pair | 1.07 |
Mean z-score | -1.59 |
Structure conservation index | 0.85 |
SVM decision value | 0.88 |
SVM RNA-class probability | 0.874195 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9710537 91 + 22224390 AAAUAGGAAAACCUCGCAAAAUGCUC------CUGCUGAUACCGCUUUUCCUGACCCUUUUGGGGGCUGAGGCCCAGCAAUUUGGCAGUGAGUUUUA ....(((....)))........((((------((((..(....(((...(((.(((((....)))).).)))...)))...)..)))).)))).... ( -26.10) >DroSec_CAF1 51555 91 + 1 AAAUAGGAAAACCUCGCAAAAUGCUC------CUGCUGAUAGCGCUUUUCCUGGCCCUUUUGGGGGCUGAGGCCCAGCAAUUUGGCAGUGAGUUUUC ......((((((.((((.....))..------((((..(....(((...(((((((((....)))))).)))...)))...)..)))).)))))))) ( -30.10) >DroSim_CAF1 26305 91 + 1 AAAUAGGAAAACCUCGCAAAAUGCUC------CUGCUGAUAGCGCUUUUCCUGGCCCUUUUGGGGGCUGAGGCCCAGCAAUUUGGCAGUGAGUUCUC ....(((....)))........((((------((((..(....(((...(((((((((....)))))).)))...)))...)..)))).)))).... ( -30.00) >DroEre_CAF1 28881 97 + 1 AGGAAGGAAAGCCUCGCAAAAUGCUCCUGCUCCUGCUUGUACCGCUUUUCCUGGCCCUCUUGGGGGCUGAGGCCCAGCAGUUUGGCAGUGAGUUUUC (((((((....))).((.....))))))(((((((((...((.(((...(((((((((....)))))).)))...))).))..))))).)))).... ( -37.10) >DroYak_CAF1 28490 91 + 1 AGAUGGGAAAACCUCGCAAAAUGCUC------CUGCUUAUACCGCUUUUCCUGGCCCUCUUGGGGGCUGAGGCCCAGCAAUUUGGCAGUGAGUUCUC .((.((.....)))).......((((------(((((......(((...(((((((((....)))))).)))...))).....))))).)))).... ( -31.30) >consensus AAAUAGGAAAACCUCGCAAAAUGCUC______CUGCUGAUACCGCUUUUCCUGGCCCUUUUGGGGGCUGAGGCCCAGCAAUUUGGCAGUGAGUUUUC ......((((((.((((.....))........(((((((....(((...(((((((((....)))))).)))...)))...))))))).)))))))) (-26.22 = -27.10 + 0.88)
Location | 9,710,537 – 9,710,628 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 90.79 |
Mean single sequence MFE | -29.08 |
Consensus MFE | -26.72 |
Energy contribution | -27.04 |
Covariance contribution | 0.32 |
Combinations/Pair | 1.11 |
Mean z-score | -1.46 |
Structure conservation index | 0.92 |
SVM decision value | 1.10 |
SVM RNA-class probability | 0.914723 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9710537 91 - 22224390 UAAAACUCACUGCCAAAUUGCUGGGCCUCAGCCCCCAAAAGGGUCAGGAAAAGCGGUAUCAGCAG------GAGCAUUUUGCGAGGUUUUCCUAUUU .....(((.((((...((((((...(((..((((......)))).)))...))))))....))))------..((.....)))))............ ( -25.90) >DroSec_CAF1 51555 91 - 1 GAAAACUCACUGCCAAAUUGCUGGGCCUCAGCCCCCAAAAGGGCCAGGAAAAGCGCUAUCAGCAG------GAGCAUUUUGCGAGGUUUUCCUAUUU ((((((((.((((.....((((...(((..((((......)))).)))...))))......))))------..((.....)))).))))))...... ( -27.70) >DroSim_CAF1 26305 91 - 1 GAGAACUCACUGCCAAAUUGCUGGGCCUCAGCCCCCAAAAGGGCCAGGAAAAGCGCUAUCAGCAG------GAGCAUUUUGCGAGGUUUUCCUAUUU ((((((((.((((.....((((...(((..((((......)))).)))...))))......))))------..((.....)))).))))))...... ( -27.80) >DroEre_CAF1 28881 97 - 1 GAAAACUCACUGCCAAACUGCUGGGCCUCAGCCCCCAAGAGGGCCAGGAAAAGCGGUACAAGCAGGAGCAGGAGCAUUUUGCGAGGCUUUCCUUCCU ((((.(((.((((...((((((...(((..((((......)))).)))...))))))....))))..((((((...)))))))))..))))...... ( -33.80) >DroYak_CAF1 28490 91 - 1 GAGAACUCACUGCCAAAUUGCUGGGCCUCAGCCCCCAAGAGGGCCAGGAAAAGCGGUAUAAGCAG------GAGCAUUUUGCGAGGUUUUCCCAUCU (((((((((((((....((.((((.((((.........)))).)))).))..)))))....((((------((...)))))))).))))))...... ( -30.20) >consensus GAAAACUCACUGCCAAAUUGCUGGGCCUCAGCCCCCAAAAGGGCCAGGAAAAGCGGUAUCAGCAG______GAGCAUUUUGCGAGGUUUUCCUAUUU ((((((((.((((...((((((...(((..((((......)))).)))...))))))....))))........((.....)))).))))))...... (-26.72 = -27.04 + 0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:17 2006