Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,709,253 – 9,709,350 |
Length | 97 |
Max. P | 0.997271 |
Location | 9,709,253 – 9,709,350 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 95.67 |
Mean single sequence MFE | -28.24 |
Consensus MFE | -26.54 |
Energy contribution | -26.46 |
Covariance contribution | -0.08 |
Combinations/Pair | 1.12 |
Mean z-score | -1.89 |
Structure conservation index | 0.94 |
SVM decision value | 2.83 |
SVM RNA-class probability | 0.997271 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9709253 97 - 22224390 ACUUUUUGCCCAGUGGGCGUGGCAGAUGGCGCCUUCUCCUUCGGCUAUUCUGCUUCUUCUUGGUCCACAGCACGCUGUGCUCUAUUAGAAUCUUCUU .......((((...))))..((((((....(((.........)))...))))))(((...(((..(((((....)))))..)))..)))........ ( -27.80) >DroSec_CAF1 50605 97 - 1 ACUUUUAGCCCAGUGGGCGUGGCAGAUGGCGCCUUCUCCUUGGGCUAUUCUGCUUCUUCUUGGUCCACAGCAAGCUGUGCUCUAUUAGAAUCUUCUU .......((((...))))..((((((((((.((........)))))).))))))(((...(((..(((((....)))))..)))..)))........ ( -32.00) >DroSim_CAF1 25035 97 - 1 ACUUUUAGCCCAGUGGGCGUGGCAGAUGGCGCCUUCUCCUUCGGCUAUUCUGCUUCUUCUUGGUCCACAGCAAGCUGUGCUCUAUUAGAAUCUUCUU .......((((...))))..((((((....(((.........)))...))))))(((...(((..(((((....)))))..)))..)))........ ( -28.00) >DroEre_CAF1 27642 95 - 1 ACUUUUUGCCCAGUGGGCGUGGCAGAUGGCGCC-UCUCCUUCGACUAUUCUGUUUCUU-UAGGUCCACAGCAAGCUGUGCUCCAUUAGAAUCUUCUU .......((((...))))...((((((((((..-.......)).))).)))))((((.-..((..(((((....)))))..))...))))....... ( -23.70) >DroYak_CAF1 27184 97 - 1 ACUUUUUGCCCAGUGGGCGUGGCAGAUGGCGCCUUCUCCUUCGGCCAUUCUGCUUCUUCUUGGUCCACAGCAAGCUGUGCUCUAUUAGAAUCUUCUU .......((((...))))..((((((((((.............)))).))))))(((...(((..(((((....)))))..)))..)))........ ( -29.72) >consensus ACUUUUUGCCCAGUGGGCGUGGCAGAUGGCGCCUUCUCCUUCGGCUAUUCUGCUUCUUCUUGGUCCACAGCAAGCUGUGCUCUAUUAGAAUCUUCUU .......((((...))))..((((((((((.............)))).))))))(((...(((..(((((....)))))..)))..)))........ (-26.54 = -26.46 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:15 2006