Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,707,372 – 9,707,475 |
Length | 103 |
Max. P | 0.833934 |
Location | 9,707,372 – 9,707,475 |
---|---|
Length | 103 |
Sequences | 6 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 78.95 |
Mean single sequence MFE | -26.23 |
Consensus MFE | -19.81 |
Energy contribution | -19.78 |
Covariance contribution | -0.03 |
Combinations/Pair | 1.14 |
Mean z-score | -1.46 |
Structure conservation index | 0.76 |
SVM decision value | 0.73 |
SVM RNA-class probability | 0.833934 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9707372 103 + 22224390 AGCCCCUCUCUCGAUUACGAAGUUGCCUGUGCGAAAAUAAUCGCAUUUCCGAUUCGCGAUUUGUGAUUAGCGUGCGAUAAACAUUCGCUCGCUUCCUU--UGUGC-------- ...............(((((((((((....))))...((((((((..((((...)).))..))))))))(((.((((.......)))).)))...)))--)))).-------- ( -28.00) >DroSec_CAF1 48820 102 + 1 GCCC-CUCCCUCGAUUACGAAGUUGCCUAUGCGAAAAUAAUCGCAUUUCCGAUUCGCGAUUUGUGAUUAGCGUGCGAUAAACAUUCGCUCGCUUCCUU--UGUGC-------- ....-..........(((((((((((....))))...((((((((..((((...)).))..))))))))(((.((((.......)))).)))...)))--)))).-------- ( -28.00) >DroSim_CAF1 23260 103 + 1 UCCCUCCCCCUCGAUUACGAAGUUGCCUAUGCGAAAAUAAUCGCAUUUCCGAUUCGCGAUUUGUGAUUAGCGUGCGAUAAACAUUCGCUCGCUUUCUU--UGUGC-------- ...............(((((((((((....))))...((((((((..((((...)).))..))))))))(((.((((.......)))).)))...)))--)))).-------- ( -27.80) >DroEre_CAF1 25994 86 + 1 -----------------CGGAGUUGCCUGUGCAAAAAUAAUCGCAUUUCCGAUUCGCGAUUUGUGAUUAGCGUGCGAUAAACAGUCGCUCGCGUCCUU--UGUGC-------- -----------------.((.....)).(..((((..((((((((..((((...)).))..))))))))(((.(((((.....))))).)))....))--))..)-------- ( -27.90) >DroWil_CAF1 30272 103 + 1 AUGC-GACUU-------UUGUG-UAUUUGUGCAAAAAUAAUCGCAUUUCCGAUUUGCGAUUUGUGAUUAGCGUGCGAUAAACAUUUUCUG-CCUCCGUGCUGUGCUUUUGUGU ((((-...((-------(((..-(....)..))))).((((((((..((........))..)))))))))))).......((((.....(-((........).))....)))) ( -19.30) >DroYak_CAF1 25339 95 + 1 ACCC-CUCCC-------UUGAGUUGCUUGUGCAAAAAUAAUCGCAUUUCCGAUUCGCGAUUUGUGAUUAGCGUGCGAUAAACAUUCGCUCGCUGCCUU--UGUGC-------- ....-(((..-------..)))......(..((((..((((((((..((((...)).))..))))))))(((.((((.......)))).)))....))--))..)-------- ( -26.40) >consensus ACCC_CUCCC_______CGAAGUUGCCUGUGCAAAAAUAAUCGCAUUUCCGAUUCGCGAUUUGUGAUUAGCGUGCGAUAAACAUUCGCUCGCUUCCUU__UGUGC________ ..............................(((....((((((((..((((...)).))..))))))))(((.((((.......)))).)))..........)))........ (-19.81 = -19.78 + -0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:14 2006