Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,706,830 – 9,706,929 |
Length | 99 |
Max. P | 0.932686 |
Location | 9,706,830 – 9,706,929 |
---|---|
Length | 99 |
Sequences | 3 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 89.07 |
Mean single sequence MFE | -23.58 |
Consensus MFE | -21.29 |
Energy contribution | -21.07 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.06 |
Mean z-score | -2.33 |
Structure conservation index | 0.90 |
SVM decision value | 1.22 |
SVM RNA-class probability | 0.932686 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9706830 99 + 22224390 AACCCCCUUUCUCCAUUGAAUCCCCACCACAUACCCACCCACCGCUGGCACUGGCACC---ACCCCUCC---CUGCGGUGCCCACUUAAAUGGCAAGUGGUGCGG ........(((......)))..((((((((.........((((((.((....((....---.))....)---).)))))).(((......)))...)))))).)) ( -26.80) >DroSec_CAF1 48312 101 + 1 AACCCCCUCUCACCGUUGAAUCCCCACCACAUACCC----ACCACUGGCACUGGCACCCACACCCCUCCCACCCGCAGUGCCCACUCAAAUGGCAAGUGGUGCGG ......................((((((((....((----(.....(((((((......................)))))))........)))...)))))).)) ( -21.97) >DroSim_CAF1 22722 101 + 1 AACCCCCUCUCACCAUUGAAUCCCCACCACAUACCC----ACCACUGGCACUGGCACCCACACCCCUCCCACCCGCAGUGCCCACUCAAAUGGCAAGUGGUGCGG ......................((((((((....((----(.....(((((((......................)))))))........)))...)))))).)) ( -21.97) >consensus AACCCCCUCUCACCAUUGAAUCCCCACCACAUACCC____ACCACUGGCACUGGCACCCACACCCCUCCCACCCGCAGUGCCCACUCAAAUGGCAAGUGGUGCGG ......................((((((((...((...........(((((((......................))))))).........))...)))))).)) (-21.29 = -21.07 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:13 2006