Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,705,041 – 9,705,144 |
Length | 103 |
Max. P | 0.999776 |
Location | 9,705,041 – 9,705,144 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 98.45 |
Mean single sequence MFE | -23.80 |
Consensus MFE | -23.80 |
Energy contribution | -23.80 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.54 |
Structure conservation index | 1.00 |
SVM decision value | 4.05 |
SVM RNA-class probability | 0.999776 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9705041 103 - 22224390 AUCCAAGCGAUUGCCAAUUGCAUAAAAGCCAAUUUGCCAUGGCUGCAAAAUAGCCGCAAGUGGCAAUUUAUUAACACAUUCAACACAAGCACUAGCACACCGA ........((((((((.((((.....(((((........)))))((......)).)))).))))))))....................((....))....... ( -23.80) >DroSec_CAF1 46541 103 - 1 AUCCAAGCGAUUGCCAAUUGCAUAAAAGCCAAUUUGCCAUGGCUGCAAAAUAGCCGCAAGUGGCAAUUUAUUAACACAUUCGACACAAGCACUAGCACACCGA ........((((((((.((((.....(((((........)))))((......)).)))).))))))))....................((....))....... ( -23.80) >DroSim_CAF1 20953 103 - 1 AUCCAAGCGAUUGCCAAUUGCAUAAAAGCCAAUUUGCCAUGGCUGCAAAAUAGCCGCAAGUGGCAAUUUAUUAACACAUUCGACACAAGCACUAGCACACCGA ........((((((((.((((.....(((((........)))))((......)).)))).))))))))....................((....))....... ( -23.80) >DroEre_CAF1 23865 103 - 1 AUCCAAGCGAUUGCCAAUUGCAUAAAAGCCAAUUUGCCAUGGCUGCAAAAUAGCCGCAAGUGGCAAUUUAUUAACACAUUCAACUCAAGCACCAGCACACCGA ........((((((((.((((.....(((((........)))))((......)).)))).))))))))....................((....))....... ( -23.80) >DroYak_CAF1 23035 103 - 1 AUCCAAGCGAUUGCCAAUUGCAUAAAAGCCAAUUUGCCAUGGCUGCAAAAUAGCCGCAAGUGGCAAUUUAUUAACACAUUCAACUCAAGCACUAGCACACCGA ........((((((((.((((.....(((((........)))))((......)).)))).))))))))....................((....))....... ( -23.80) >consensus AUCCAAGCGAUUGCCAAUUGCAUAAAAGCCAAUUUGCCAUGGCUGCAAAAUAGCCGCAAGUGGCAAUUUAUUAACACAUUCAACACAAGCACUAGCACACCGA ........((((((((.((((.....(((((........)))))((......)).)))).))))))))....................((....))....... (-23.80 = -23.80 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:12 2006