Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,109,168 – 1,109,273 |
Length | 105 |
Max. P | 0.935265 |
Location | 1,109,168 – 1,109,273 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 71.77 |
Mean single sequence MFE | -17.83 |
Consensus MFE | -14.10 |
Energy contribution | -14.30 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -0.92 |
Structure conservation index | 0.79 |
SVM decision value | 1.24 |
SVM RNA-class probability | 0.935265 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1109168 105 + 22224390 CGUGACACGCGAUAAAGCUUACAAAUCACGAUUGAUCGUGAUUGAUCACGCACCCGAAAAGCCGC--CCCACACCCCUCCUUUCCACUCCUCGCGAACAUACUCUCA .(((...(((((....((.....((((((((....))))))))......))...((......)).--.......................)))))..)))....... ( -17.90) >DroSec_CAF1 5951 82 + 1 CGUGACACGCGAUCGAGCUUACAAAUCACGAUUGAUCGUGUUUGAUCACGCACCCGAAAAACC-------------------------CCCCGCGCACAUACUCGCA (((((.((((((((((...............))))))))))....))))).............-------------------------....(((........))). ( -18.76) >DroSim_CAF1 5997 82 + 1 CGUGACACGCGAUCGAGCUUACAAAUCACGAUUGAUCGUGAUUGAUCACGCACCCGAAAAGCC-------------------------CCCCGCGCACAUACUCGCA .(((...((((...(.((((...((((((((....)))))))).....((....))..)))))-------------------------...)))))))......... ( -18.90) >DroEre_CAF1 6500 97 + 1 CGUGACACGCGAUCGAGCUUACAAAUCACGAUUGAACGUGAUUGAUCACGCACCCGAAACGCCACAGCCCCCACCCCCACCUACCACCCUU----------CUCGCA ........(((((((.((.....(((((((......)))))))......))...)))...((....)).......................----------.)))). ( -15.90) >DroYak_CAF1 6091 94 + 1 CGUGACACGCGAUCGAGCUUACAAAUCACGAUUGAUCGUGAUUGAUCACGCACCCGAGA-GCCAAACACCCCCCUCCACCCCUCCACCCCU------------CGCA .(((....((..(((.((.....((((((((....))))))))......))...)))..-))....)))......................------------.... ( -17.70) >consensus CGUGACACGCGAUCGAGCUUACAAAUCACGAUUGAUCGUGAUUGAUCACGCACCCGAAAAGCC_____CC_C_C_CC__C___CCAC_CCUCGCG_ACAUACUCGCA (((((...((......)).....(((((((......)))))))..)))))......................................................... (-14.10 = -14.30 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:36 2006