Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,703,053 – 9,703,148 |
Length | 95 |
Max. P | 0.845437 |
Location | 9,703,053 – 9,703,148 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 79.67 |
Mean single sequence MFE | -29.57 |
Consensus MFE | -20.78 |
Energy contribution | -21.21 |
Covariance contribution | 0.42 |
Combinations/Pair | 1.22 |
Mean z-score | -1.72 |
Structure conservation index | 0.70 |
SVM decision value | 0.77 |
SVM RNA-class probability | 0.845437 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9703053 95 + 22224390 GAAAUUAAAA--UGCACACCAAAAACCGCGCGUUUUGAAUUUUCGCGCGCGUUUUUUGGGCAC------------CCGCUUUUGCAUAAAUUCAG-----------GGCGUACAUUUUGC .....(((((--((....(((((((.(((((((...........))))))).)))))))((.(------------((....((.....))....)-----------)).)).))))))). ( -28.70) >DroGri_CAF1 24546 104 + 1 GAAAUUAAAAUAUGCAGACACAAAACCGCGCGUUUUGAAUUUUGGCGCG--AUUUUUGGUU--------------ACGGCUUUGCAUAAAUUUCCGAGUGCCAAGGAGGCAACAAUACUC ((((((....((((((((..(..(((((((((((.........))))))--.....)))))--------------..)..))))))))))))))....((((.....))))......... ( -25.20) >DroSec_CAF1 44521 98 + 1 GAAAUUAAAAUAUGCAGACCGAAAACCGCGCGUUUUGAAUUUUCGCGCGCGUUUUUUGGGCCC------------GCGCUUUUGCAUAAAUUCAG----------GGGCGUACACUUCGC (((...............(((((((.(((((((...........))))))).)))))))....------------(((((((((........)))----------))))))....))).. ( -29.70) >DroSim_CAF1 18951 98 + 1 GAAAUUAAAAUAUGCAGACCGAAAACCGCGCGUUUUGAAUUUUCGCGCGCGUUUUUUGGGCCC------------CCGCUUUUGCAUAAAUUCAG----------GGGCGUACACUUCGC ............(((...(((((((.(((((((...........))))))).)))))))((((------------(.(..(((....)))..).)----------)))))))........ ( -30.80) >DroEre_CAF1 21915 96 + 1 GAAAUUAAAAUAUGCAGACCGAAAACCGCGCGUUUUGAAUUUUCGCGCGCGUUUUUUGGGC-------------ACCGCUUUUGCAUAAAUUCGG-----------GGCAUGCCGCUUGC ..........(((((((((((((((.(((((((...........))))))).)))))))((-------------...)).)))))))).....(.-----------((....)).).... ( -29.70) >DroYak_CAF1 20908 109 + 1 GAAAUUAAAAUAUGCAGACCGAAAACCGCGCGUUUUGAAUUUUCGCGCGCGUUUUUUGUGCCCCGCCCCCUCCCACCGCGUUUGCAUAAAUUCAG-----------GGCGUGCAGUUUGC .............((((((.(.....)(((((((((((((((..(((((((.....)))))..(((...........)))...))..))))))))-----------))))))).)))))) ( -33.30) >consensus GAAAUUAAAAUAUGCAGACCGAAAACCGCGCGUUUUGAAUUUUCGCGCGCGUUUUUUGGGCCC____________CCGCUUUUGCAUAAAUUCAG___________GGCGUACACUUCGC ..........(((((((((((((((.(((((((...........))))))).)))))))((................)).))))))))...................(((.......))) (-20.78 = -21.21 + 0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:08 2006