Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,702,628 – 9,702,739 |
Length | 111 |
Max. P | 0.646175 |
Location | 9,702,628 – 9,702,739 |
---|---|
Length | 111 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 87.43 |
Mean single sequence MFE | -35.70 |
Consensus MFE | -22.72 |
Energy contribution | -23.72 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.10 |
Mean z-score | -2.55 |
Structure conservation index | 0.64 |
SVM decision value | 0.23 |
SVM RNA-class probability | 0.646175 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9702628 111 - 22224390 AACUGGGGUCCAUUUGCUUUGUGGUCCCCAGAGGAAGUCCGCCCUGAUCGAAAGUGGAAAGUGGAAGU--------GCGGGCUAAAAUAGCA-AUACCACAAACUAAUCAUCCAAGAAAA ..((((((.((((.......)))).)))))).(((..(((((...........)))))..((((...(--------((...........)))-...))))..........)))....... ( -35.20) >DroSec_CAF1 44104 111 - 1 AACUGGGGUCCAUUUGCUUUGUGGUCCCCAAAGGAAGUCCGUCCUGAUCGAAAGUGGAAAGUGGUAGU--------GCGGACUAAAAUGGCA-AUACCACAAACUAAUCACCCAAGAAAA ...(((((.((((.......)))).)))))..((.......(((....(....).)))..((((((.(--------((...........)))-.))))))...........))....... ( -32.50) >DroSim_CAF1 18516 111 - 1 AACUGGGGUCCAUUUGCUUUGUGGUCCCCAAAGGAAGUCCGUCCUGAUCGAAAGUGGAAUGUGGUAGU--------GCGGACUAAAAUGGCA-AUACCACAAACUAAUCACCCAAGAAAA ...(((((.((((.......)))).)))))..((.......(((....(....).))).(((((((.(--------((...........)))-.)))))))..........))....... ( -33.30) >DroEre_CAF1 21484 105 - 1 AACUGGGGUCCAUUUGCUUUGUGGUCCCCAGAGGAAGUGCGACCCGAUCGAAAGUGGACAGC--------------GCAGGCUGGAAUUGCA-AUACCACAAACUAAUCAGCCAAGAAAA ..((((((.((((.......)))).)))))).....((((...(((..(....))))...))--------------)).((((((..(((..-......))).....))))))....... ( -35.10) >DroYak_CAF1 20414 120 - 1 AACUGGGGUCCAUUUGCUUUGUGGUCCCCAGAGGAUGUCCGCCCUGAUCGAAAGUGGAAGGUGGUGGUGGUAAGUUGCGGGGUAAAAUUGCAAAUACCACAAACUAAUCACCCAAGAAAA ..((((((.((((.......)))).)))))).((.((.(((((.....(....).....)))))..((((((..((((((.......)))))).))))))........)).))....... ( -42.40) >consensus AACUGGGGUCCAUUUGCUUUGUGGUCCCCAGAGGAAGUCCGCCCUGAUCGAAAGUGGAAAGUGGUAGU________GCGGGCUAAAAUGGCA_AUACCACAAACUAAUCACCCAAGAAAA ..((((((.((((.......)))).))))))....(((((((((....(....).))...................)))))))..................................... (-22.72 = -23.72 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:06 2006