Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,700,875 – 9,700,980 |
Length | 105 |
Max. P | 0.988206 |
Location | 9,700,875 – 9,700,980 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 90.99 |
Mean single sequence MFE | -30.53 |
Consensus MFE | -24.62 |
Energy contribution | -25.26 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.03 |
Mean z-score | -1.74 |
Structure conservation index | 0.81 |
SVM decision value | 0.82 |
SVM RNA-class probability | 0.859209 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9700875 105 + 22224390 GAUCCGGGGGCGUGGCACAUGCUGUUGCCUAAAA--AAACGAAUUUCCGCCACGCCCACCAAACAACAAUAAA-CUUGCGCUGUUUUGUCGUCCCCAUAAGGGGCACA (((..(((((((((((....((....))......--....(......)))))))))).))(((((.(((....-.)))...))))).)))((((((....)))).)). ( -33.90) >DroSec_CAF1 42379 107 + 1 GAUCCGGGGGCGUGGCACAUGCUCUUGCCUAAAAAAAAACUAAUUUCCGCCACGCCCACCAAACAACAAUAAA-CUUACGCUGUUUUGUCGUCCCCAUAAGGGGCACA (((..(((((((((((....((....))......(((......)))..))))))))).))..........(((-(.......)))).)))((((((....)))).)). ( -32.00) >DroSim_CAF1 16804 106 + 1 GAUCCGGGGGCGUGGCACAUGCUGUUGCCUAAAA-AAAACUAAUUUCCGCCACGCCCACCAAACAACAAUAAA-CUUACGCUGUUUUGUCGUCCCCAUAAGGGGCACA (((..(((((((((((.......(((........-..)))........))))))))).))..........(((-(.......)))).)))((((((....)))).)). ( -32.66) >DroEre_CAF1 19815 105 + 1 GAUCCGGGGGCGUGGCACGCGCUGUCGCCUACGA--AAACUAAUUUCCGCCACGACCACCAAACAACAAUAAA-CUGGCGCUGUUUUGUCGUCCCCAUAAGAGGCACA .....(((((((((((..(((....)))....((--((.....)))).)))))(((....(((((.((.....-.))....))))).)))))))))............ ( -28.50) >DroYak_CAF1 18526 106 + 1 GAUCCGGGGGCGUGGCACACGCUGUCGCCUACAA--AAACUAAUUUCCGCCACGACCACCAAACAACAAUGUUUGUUUUGCUGUUUUGUCGUUCCCAUAAGAGGCACA .....(..((((((((....)))).))))..)..--............((((((((....(((((.(((........))).))))).)))))((......)))))... ( -25.60) >consensus GAUCCGGGGGCGUGGCACAUGCUGUUGCCUAAAA__AAACUAAUUUCCGCCACGCCCACCAAACAACAAUAAA_CUUACGCUGUUUUGUCGUCCCCAUAAGGGGCACA (((..(((((((((((....((....))........(((....)))..))))))))).))(((((.(............).))))).)))((((((....)))).)). (-24.62 = -25.26 + 0.64)
Location | 9,700,875 – 9,700,980 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 90.99 |
Mean single sequence MFE | -38.74 |
Consensus MFE | -32.72 |
Energy contribution | -33.12 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.06 |
Mean z-score | -2.12 |
Structure conservation index | 0.84 |
SVM decision value | 2.11 |
SVM RNA-class probability | 0.988206 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9700875 105 - 22224390 UGUGCCCCUUAUGGGGACGACAAAACAGCGCAAG-UUUAUUGUUGUUUGGUGGGCGUGGCGGAAAUUCGUUU--UUUUAGGCAACAGCAUGUGCCACGCCCCCGGAUC .((.((((....))))))(((((...(((....)-))..)))))((((((.((((((((((((((......)--)))).(....).......))))))))))))))). ( -43.50) >DroSec_CAF1 42379 107 - 1 UGUGCCCCUUAUGGGGACGACAAAACAGCGUAAG-UUUAUUGUUGUUUGGUGGGCGUGGCGGAAAUUAGUUUUUUUUUAGGCAAGAGCAUGUGCCACGCCCCCGGAUC .((.((((....))))))(((((...(((....)-))..)))))((((((.((((((((((((((........)))))..((....))....))))))))))))))). ( -42.10) >DroSim_CAF1 16804 106 - 1 UGUGCCCCUUAUGGGGACGACAAAACAGCGUAAG-UUUAUUGUUGUUUGGUGGGCGUGGCGGAAAUUAGUUUU-UUUUAGGCAACAGCAUGUGCCACGCCCCCGGAUC .((.((((....))))))(((((...(((....)-))..)))))((((((.((((((((((((((........-)))).(....)......)))))))))))))))). ( -42.10) >DroEre_CAF1 19815 105 - 1 UGUGCCUCUUAUGGGGACGACAAAACAGCGCCAG-UUUAUUGUUGUUUGGUGGUCGUGGCGGAAAUUAGUUU--UCGUAGGCGACAGCGCGUGCCACGCCCCCGGAUC .((.((((....))))))(((((...(((....)-))..)))))((((((.((.(((((((((((.....))--))....(((....))).))))))).)))))))). ( -34.20) >DroYak_CAF1 18526 106 - 1 UGUGCCUCUUAUGGGAACGACAAAACAGCAAAACAAACAUUGUUGUUUGGUGGUCGUGGCGGAAAUUAGUUU--UUGUAGGCGACAGCGUGUGCCACGCCCCCGGAUC ...........((((.(((((.(((((((((........)))))))))....)))))((((((((.....))--))(((.(((....))).)))..)))))))).... ( -31.80) >consensus UGUGCCCCUUAUGGGGACGACAAAACAGCGCAAG_UUUAUUGUUGUUUGGUGGGCGUGGCGGAAAUUAGUUU__UUUUAGGCAACAGCAUGUGCCACGCCCCCGGAUC .((.((((....))))))....((((((((..........))))))))((.((((((((((.(.....((((......)))).......).))))))))))))..... (-32.72 = -33.12 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:05 2006