Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,698,691 – 9,698,781 |
Length | 90 |
Max. P | 0.584446 |
Location | 9,698,691 – 9,698,781 |
---|---|
Length | 90 |
Sequences | 3 |
Columns | 90 |
Reading direction | reverse |
Mean pairwise identity | 82.96 |
Mean single sequence MFE | -17.37 |
Consensus MFE | -14.35 |
Energy contribution | -13.80 |
Covariance contribution | -0.55 |
Combinations/Pair | 1.14 |
Mean z-score | -1.45 |
Structure conservation index | 0.83 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.584446 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9698691 90 - 22224390 UUAAAGUGGAAAUUUUAUGUGAGUUGGUUAUUUAAUGGCCAACGAAAAUGGUUAUAACUUUAAGCAUACAAUAGGCAUUCAAGUGGCACC .((((((....))))))((((.(((((((((...))))))))).....((.(((......))).))))))...(.(((....))).)... ( -17.80) >DroSec_CAF1 40215 90 - 1 UUGAAGUGGAAAUUGUAUGUGAGUUUGUUAUUUAAUGGCCAACGAAAAUGGUUAAGACUUUAAGCAUACAAUAGGCAUUCAAGAUGCACC .......((..(((((((((((((((.........((((((.......))))))))))))...)))))))))..(((((...))))).)) ( -18.80) >DroSim_CAF1 14672 75 - 1 UUGAAGUGGAAAUUGUAUGUGAGUUUGUUAUUAAAUAGCCAACGAAAAUGGUUAAGACUUUAAGCAUACAAUAGG--------------- ...........(((((((((((((((.........((((((.......))))))))))))...)))))))))...--------------- ( -15.50) >consensus UUGAAGUGGAAAUUGUAUGUGAGUUUGUUAUUUAAUGGCCAACGAAAAUGGUUAAGACUUUAAGCAUACAAUAGGCAUUCAAG__GCACC ...........(((((((((((((((.........((((((.......))))))))))))...))))))))).................. (-14.35 = -13.80 + -0.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:03 2006