Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,103,439 – 1,103,547 |
Length | 108 |
Max. P | 0.576331 |
Location | 1,103,439 – 1,103,547 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 90.67 |
Mean single sequence MFE | -21.93 |
Consensus MFE | -17.58 |
Energy contribution | -18.10 |
Covariance contribution | 0.52 |
Combinations/Pair | 1.11 |
Mean z-score | -1.41 |
Structure conservation index | 0.80 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.576331 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1103439 108 + 22224390 AUCCAUUCUUCAGCAGCAGUAAUUGCUCGUCAUCGUAGGGCGUCAUCACGCCCACUCCGACUCCCACUCCCACACCAAC------UCCGACGCCAACGCCCACUCCGGUCCCAA ............(((((((...))))).(((...((.((((((....))))))))...)))..................------......))....(((......)))..... ( -18.60) >DroSec_CAF1 333 108 + 1 AUCCAUUCUUCAGCAGCAGCAACUGCUCGUCAUCGUAGGGCGUCAUCACGCCCACUCCGACUCCCACUCCCACACCAAC------UCCGACGCCAACGCCCACUCCGGCCCCAA ............(((((((...))))).(((...((.((((((....))))))))...)))..................------......))....(((......)))..... ( -22.70) >DroSim_CAF1 335 108 + 1 AUCCAUUCUUCAGCAGCAGCAAAUGCUCGUCAUCGUAGGGCGUCAUCACGCCCACUCCGACUCCCACUCCCACACCAAC------UCCGACGCCAACGCCCACUCCGGCCCCAA ............((((((.....)))).(((...((.((((((....))))))))...)))..................------......))....(((......)))..... ( -21.80) >DroEre_CAF1 336 108 + 1 AUCCGUUUUUCAGCAGCAGCAACUGCUCGUCAUCGUAGGGGGUCAUCACGCCCACGCCCACUCCGACUCCCACACCAAC------UCCAACUCCCACGCCCACUCCGGCCCCAA ...((......(((((......)))))......))..(((((((.....((....)).......)))))))........------............(((......)))..... ( -21.00) >DroYak_CAF1 368 114 + 1 AUCCGUUCUUCAGCAGCAGCAGCUGCUCGUCAUCGUAGGGGGUCAUCACGCCCACUCCGACUCCCACUCCCACUCCAACGCCCACGCCAACUCCAACGCCCACUCCGGCUCCUA ...((((....((((((....)))))).......((.(((((((..............))))))))).........)))).................(((......)))..... ( -25.54) >consensus AUCCAUUCUUCAGCAGCAGCAACUGCUCGUCAUCGUAGGGCGUCAUCACGCCCACUCCGACUCCCACUCCCACACCAAC______UCCGACGCCAACGCCCACUCCGGCCCCAA ...........(((((......))))).(((...((.((((((....))))))))...)))....................................(((......)))..... (-17.58 = -18.10 + 0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:35 2006