Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,674,740 – 9,674,857 |
Length | 117 |
Max. P | 0.564659 |
Location | 9,674,740 – 9,674,857 |
---|---|
Length | 117 |
Sequences | 4 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 77.89 |
Mean single sequence MFE | -24.60 |
Consensus MFE | -16.57 |
Energy contribution | -17.76 |
Covariance contribution | 1.19 |
Combinations/Pair | 1.05 |
Mean z-score | -1.58 |
Structure conservation index | 0.67 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.564659 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9674740 117 + 22224390 AUACGAAAUUCCAAAUGG-AACUCAGCAUCGAAGCUGAAAUUGAAAACGCCGAAAAGGAAGCCCGAGGAGAUGGCUGCUGACAAUUAGCACGCAUUGGCCAUAACAAUAAACGGCAAA ...(((..((((....))-)).(((((......)))))..))).....((((....((....))..((.....((((((((...)))))).)).....))...........))))... ( -29.40) >DroSim_CAF1 21871 118 + 1 AUACGAAAUUCCAAAUGGGAGCUCAGCAUCGAAGCUGAAAUUGAAAACGCCGAAACGGAAGCCCGAGGAGAUGGCUGCUGACAAUUAGCACGCAUUGGCCAUAACAAUAAACGGCAAA ...(((..((((....))))..(((((......)))))..))).....((((...(((....))).((.....((((((((...)))))).)).....))...........))))... ( -31.30) >DroEre_CAF1 17272 95 + 1 AUACGAA--------------CUCA---------GUGAAAUUGAAAAGGCCGAAAUGGAAGCCCAACGUGAUGGCUGCUGACAAUUAGCACGCAUUGGCCAUAACAAUAAACGGCAAA ...((..--------------.(((---------((...)))))...((((((..(((....)))........((((((((...)))))).)).))))))...........))..... ( -21.50) >DroYak_CAF1 21502 91 + 1 GCUGAA------------------A---------UUGAAAUUGAAAACGUCGCAAAGGAAGCCCAAGGAGAUGGCUGCUGACAAUUAGCACGCAUUGGCCAUAACAAUAAACGGAAAA ((..(.------------------.---------.............((((.(...((....))...).))))((((((((...)))))).)).)..))................... ( -16.20) >consensus AUACGAA______________CUCA_________CUGAAAUUGAAAACGCCGAAAAGGAAGCCCAAGGAGAUGGCUGCUGACAAUUAGCACGCAUUGGCCAUAACAAUAAACGGCAAA ......................(((((......)))))..........((((....((....))......(((((((((((...))))).......)))))).........))))... (-16.57 = -17.76 + 1.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:52 2006