Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,673,312 – 9,673,432 |
Length | 120 |
Max. P | 0.997943 |
Location | 9,673,312 – 9,673,432 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 63.89 |
Mean single sequence MFE | -21.22 |
Consensus MFE | -12.97 |
Energy contribution | -12.23 |
Covariance contribution | -0.74 |
Combinations/Pair | 1.20 |
Mean z-score | -1.75 |
Structure conservation index | 0.61 |
SVM decision value | 2.97 |
SVM RNA-class probability | 0.997943 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9673312 120 + 22224390 UGCAUUAUUUAUCAAUUUGCUUUUGAAAUUUAAAGUAUUACACAAAUUGUAUUCAAAAGUUAACACUGCGUAUACGUGAUAUUCUAAUGAUCACUUUCGGCAACGGCACGUAUACUUUAU .(((..............(((((((((...........((((.....)))))))))))))......)))(((((((((....((....))......(((....))))))))))))..... ( -22.65) >DroEre_CAF1 15808 90 + 1 UGCAUUAU------------------------------UACACAGCUUGUAUUAAAAAGUUAGCAGUGCGUAUGCGUGAUAUCUUUGUGAUUGUUUUCGGCAACGGUACGUAUACUUUAU .(((((.(------------------------------((....((((........))))))).)))))(((((((((..(((.....))).....(((....))))))))))))..... ( -20.40) >DroYak_CAF1 20041 108 + 1 UGCAUUAUGUAUCAAUUUACUUUUGUAACUUGAAAAAUAACACAAAUUGUUUUAAAAAGUUAACAGUGCGUAUACGUGAUAUCUUCAUAAUUGC------------UACGUAUACUUAAC .(((((..(((......))).....((((((..(((((((......)))))))...))))))..)))))(((((((((.((..........)).------------)))))))))..... ( -20.60) >consensus UGCAUUAU_UAUCAAUUU_CUUUUG_AA_UU_AA__AUUACACAAAUUGUAUUAAAAAGUUAACAGUGCGUAUACGUGAUAUCUUAAUGAUUGCUUUCGGCAACGGUACGUAUACUUUAU .(((((................................((((.....)))).......(....))))))(((((((((.(((....))).......(((....))))))))))))..... (-12.97 = -12.23 + -0.74)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:51 2006