Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,672,384 – 9,672,480 |
Length | 96 |
Max. P | 0.904885 |
Location | 9,672,384 – 9,672,480 |
---|---|
Length | 96 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 80.09 |
Mean single sequence MFE | -23.62 |
Consensus MFE | -15.12 |
Energy contribution | -16.12 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.15 |
Structure conservation index | 0.64 |
SVM decision value | 1.04 |
SVM RNA-class probability | 0.904885 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9672384 96 - 22224390 C-----------UCCUCGGCUGCCACUCCCAUUGCCCUUCGCCUGGCUAAUGGUAAAUGCCAUUUCAAUUACGUACACAGUACUAAAAUUUUAUGCGGCCAGUCAAC------------- .-----------.....((((((.....((((((((........))).)))))...................((((...))))...........)))))).......------------- ( -21.80) >DroAna_CAF1 35871 101 - 1 -------------------CAGCCACUCCCUUUGCCCUUCGCUCGGCUAAUGGUAAAUGCCAUUUCAAUUACGUACACAGUACUAAAAUUUUAUGCGGCCAGUCGACCGGCCAGUGGCUU -------------------.(((((((......(((..(((((.((((((((((....))))))........((((...)))).............)))))).)))..))).))))))). ( -30.10) >DroEre_CAF1 14916 95 - 1 CC------------UUCAGCUGCCACUCCCAUUGCCCUUCGCCUGGCUAAUGGUAAAUGCCAUUUCAAUUACGUACACAGUACUAAAAUUUAAUGCGGCCAGUCAAC------------- ..------------....((((((....((((((((........))).))))).....((.(((........((((...))))........))))))).))))....------------- ( -17.79) >DroYak_CAF1 19167 107 - 1 CCCCCCCCCCCCUCCUCGGCUGCCGCUCCCAUCGCCCUUCGCCAGGCUAAUGGUAAAUGCCAUUUCAAUUACGUACACAGUACUAAAAUUUUAUGCGGCCAGUCAAC------------- .................(((((((((.......(((........))).((((((....))))))........((((...))))...........)))).)))))...------------- ( -24.80) >consensus C_____________CUCGGCUGCCACUCCCAUUGCCCUUCGCCUGGCUAAUGGUAAAUGCCAUUUCAAUUACGUACACAGUACUAAAAUUUUAUGCGGCCAGUCAAC_____________ .................((((((..........(((........))).((((((....))))))........((((...))))...........)))))).................... (-15.12 = -16.12 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:49 2006