Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,669,916 – 9,670,008 |
Length | 92 |
Max. P | 0.781892 |
Location | 9,669,916 – 9,670,008 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 78.53 |
Mean single sequence MFE | -34.54 |
Consensus MFE | -27.48 |
Energy contribution | -28.16 |
Covariance contribution | 0.68 |
Combinations/Pair | 1.08 |
Mean z-score | -1.47 |
Structure conservation index | 0.80 |
SVM decision value | 0.56 |
SVM RNA-class probability | 0.781892 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9669916 92 - 22224390 -----------CUUUCCCGGACUUUUAAUGAUGUUGCUCGACUGUCUCCGGCUUCACUUGCAGCUGCACCACUGAGUGACCGGAUGACCGCAGCAUCAGCAG-----------------A -----------.................(((((((((......((((((((..(((((..(((........))))))))))))).))).)))))))))....-----------------. ( -28.40) >DroAna_CAF1 33228 108 - 1 CUCAGCCAACCGUUUCGAGGAGUUAUAAUGAUGUUGCUCCACUGUCUCCGGCUUCACUUGCAGCUGC--CGCUGAGUGACCGGAUGACCGCAACGUCCAAAGC------AUCCACG---- ...............((.((((((.....((((((((......((((((((..(((((..((((...--.)))))))))))))).))).))))))))...)))------.))).))---- ( -34.20) >DroSim_CAF1 19078 91 - 1 -----------CUUUCCCGGACUU-UAAUGAUGUUGCUCGACUGUCUCCGGCUUCACUUGCAGCUGCACCGCUGAGUGACCGGAUGACCGCAGCAUCAGCAG-----------------G -----------.............-...(((((((((......((((((((..(((((..((((......)))))))))))))).))).)))))))))....-----------------. ( -32.30) >DroEre_CAF1 12450 107 - 1 -----------CUUUCCCGGACUUUUAAUGAUGUUGCUCGACUGUCUCCGGCUUCACUUGCAGCUGCAACGCUGAGUGACCGGAUGACCGCAGCAUCAGCAGGGCGAAAAUCUAUGG--G -----------....((((((.((((..(((((((((......((((((((..(((((..((((......)))))))))))))).))).)))))))))((...)))))).)))..))--) ( -37.10) >DroYak_CAF1 16601 108 - 1 -----------CUUUCCCGGACUUUUAAUGAUGUUGCUCGACUGUCUCCGGCUUCACUUGCAGCUGCACCGCUGAGUGACCGGAUAACCACAGCAGCAGUCGGGCGA-AAUCUAUGGGGG -----------...(((((..........(((.((((((((((((.(((((..(((((..((((......))))))))))))))...........))))))))))))-.)))..))))). ( -40.70) >consensus ___________CUUUCCCGGACUUUUAAUGAUGUUGCUCGACUGUCUCCGGCUUCACUUGCAGCUGCACCGCUGAGUGACCGGAUGACCGCAGCAUCAGCAG_______AUC_A_G___G ............................(((((((((......((((((((..(((((..((((......)))))))))))))).))).)))))))))...................... (-27.48 = -28.16 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:47 2006