Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,663,321 – 9,663,428 |
Length | 107 |
Max. P | 0.543263 |
Location | 9,663,321 – 9,663,428 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 90.02 |
Mean single sequence MFE | -37.98 |
Consensus MFE | -26.01 |
Energy contribution | -26.45 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.03 |
Mean z-score | -2.18 |
Structure conservation index | 0.68 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.543263 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9663321 107 + 22224390 AAUGGCAGCUGCAAUUGGCAGU-------UGG-CAGUUUGC-----UGGCCGAGAGUUUCCAGUUGAGUUCUAAGCUCGCUUAAUUGUUCCCAAUGGUUGGAACAAUGGCAUGGCAACAA ..((.(((((((.....)))))-------)).-))(((.((-----(((((..((((((..((.......)))))))).....((((((((........))))))))))).))))))).. ( -36.90) >DroAna_CAF1 27273 113 + 1 AAUGGCAGCUGCAAUUGGCAGU-------UUGUGAGUCCGGAGCAGGGGGCGGGCGCUUCCAGUUGAGUUCUAAGCCCGUUUAAUUGUUCCCAAUGGCUGGAACAAUGGCAUGGCAACAA .(((.(((((((.....)))))-------((((.((((.(((((((..(((((((((((......)))).....)))))))...)))))))....))))...)))))).)))(....).. ( -36.30) >DroSim_CAF1 13313 107 + 1 AAUGGCAGCUGCAAUUGGCAGU-------UGG-CAGUUUGC-----UGGCCGAAAGUUUCCAGUUGAGUUCUAAGCUCGCUUAAUUGUUCCCAAUGGUUGGAACAAUGGCAUGGCAACAA ..((.(((((((.....)))))-------)).-))....((-----(((.(....)...))))).((((.....))))(((..((((((((........))))))))))).((....)). ( -37.60) >DroEre_CAF1 5732 107 + 1 AAUGGCAGCUGCAAUUGGCAGU-------UGG-CAGUUUGC-----UGGCCGAAAGUUUCCAGUUGAGUUCUAAGCUCGCUUAAUUGUUCCCAAUGGUUGGAACAAUGGCAUGGCAACAA ..((.(((((((.....)))))-------)).-))....((-----(((.(....)...))))).((((.....))))(((..((((((((........))))))))))).((....)). ( -37.60) >DroYak_CAF1 9717 114 + 1 AAUGGCAGCUGCAAUUGGCAGUUGGCAGUUGG-CAGUUUGC-----UGGCCGAGAGUUUCCAGUUGAGUUCUAAGCUCGCUUAAUUGUUCCCAAUGGCUGGAACAAUGGCAUGGCAACAA ..((.(((((((.....))))))).))((((.-((....((-----(((.(....)...))))).((((.....))))(((..((((((((........))))))))))).)).)))).. ( -41.50) >consensus AAUGGCAGCUGCAAUUGGCAGU_______UGG_CAGUUUGC_____UGGCCGAGAGUUUCCAGUUGAGUUCUAAGCUCGCUUAAUUGUUCCCAAUGGUUGGAACAAUGGCAUGGCAACAA ..((((.(((((.....)))))..........................))))...(((.(((...((((.....))))(((..((((((((........))))))))))).))).))).. (-26.01 = -26.45 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:36 2006